Tools for Analyzing MCMC Simulations from Bayesian Inference

ac | Calculate the autocorrelation of a single chain, for a... |

calc_bin | Calculate binwidths by parameter, based on the total number... |

ci | Calculate Credible Intervals (wide and narrow). |

custom.sort | Auxiliary function that sorts Parameter names taking into... |

get_family | Subset a ggs object to get only the parameters with a given... |

ggmcmc | Wrapper function that creates a single pdf file with all... |

ggs | Import MCMC samples into a ggs object than can be used by all... |

ggs_autocorrelation | Plot an autocorrelation matrix |

ggs_caterpillar | Caterpillar plot with thick and thin CI |

ggs_chain | Auxiliary function that extracts information from a single... |

ggs_compare_partial | Density plots comparing the distribution of the whole chain... |

ggs_crosscorrelation | Plot the Cross-correlation between-chains |

ggs_density | Density plots of the chains |

ggs_geweke | Dotplot of the Geweke diagnostic, the standard Z-score |

ggs_histogram | Histograms of the paramters. |

ggs_pairs | Create a plot matrix of posterior simulations |

ggs_ppmean | Posterior predictive plot comparing the outcome mean vs the... |

ggs_ppsd | Posterior predictive plot comparing the outcome standard... |

ggs_Rhat | Dotplot of Potential Scale Reduction Factor (Rhat) |

ggs_rocplot | Receiver-Operator Characteristic (ROC) plot for models with... |

ggs_running | Running means of the chains |

ggs_separation | Separation plot for models with binary response variables |

ggs_traceplot | Traceplot of the chains |

gl_unq | Generate a factor with unequal number of repetitions. |

radon | Simulations of the parameters of a hierarchical model using... |

roc_calc | Calculate the ROC curve for a set of observed outcomes and... |

s | Simulations of the parameters of a simple linear regression... |

s.binary | Simulations of the parameters of a simple linear regression... |

sde0f | Spectral Density Estimate at Zero Frequency. |

s.y.rep | Simulations of the posterior predictive distribution of a... |

y | Values for the observed outcome of a simple linear regression... |

y.binary | Values for the observed outcome of a binary logistic... |

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