Man pages for ggpedigree
Visualizing Pedigrees with 'ggplot2' and 'plotly'
| addFocalFillColumn | Add Focal Fill Column to Pedigree Data |
| alignPedigreeWithHints | Align pedigree with hints for plotting This function aligns a... |
| alignPedigreeWithRelations | Align pedigree with additional relations |
| ASOIAF | A pedigree of ice and fire |
| buildPlotConfig | build Config |
| buildSpouseSegments | Build spouse segments |
| calculateConnections | Calculate connections for a pedigree dataset |
| calculateCoordinates | Calculate coordinates for plotting individuals in a pedigree |
| closest_dup | Find the closest duplicate appearance based on coordinates |
| computeDistance | Compute distance between two points |
| countOffspring | Count offspring of each individual |
| countSiblings | Count siblings of each individual |
| createFillColumn | Get fill column for ggPedigree |
| dot-addAnnotate | Add annotates to ggplot Pedigree Plot |
| dot-addLabels | Add Labels to ggplot Pedigree Plot |
| dot-addNodes | Add Nodes to ggplot Pedigree Plot |
| dot-addOverlay | Add Overlay to ggplot Pedigree Plot |
| dot-addScales | Add Scales to ggplot Pedigree Plot |
| dot-addSelfSegment | Add Self Segments to ggplot Pedigree Plot |
| dot-addTwins | Add Twins to ggplot Pedigree Plot |
| dot-adjustSpacing | Adjust spacing in ggPedigree coordinate columns |
| dot-computeCurvedMidpoint | Compute point along a curved segment (quadratic Bézier) |
| dot-makeSymmetricKey | Generate a symmetric key for two IDs |
| dot-pick_first | Pick First Matching Rule |
| dot-preparePhenotypeByDegreeData | Prepare data for ggPhenotypeByDegree This function prepares... |
| dot-restoreNames | Restore user-specified column names in a connections data... |
| formatTooltip | Format tooltip text |
| generateSpouseList | Generate a spouselist matrix |
| getDefaultPlotConfig | Shared Default Plotting Configuration |
| getMidpoints | Compute midpoints across grouped coordinates |
| getRelativeCoordinates | Get coordinate positions of relatives for each individual |
| ggPedigree | Plot a custom pedigree diagram |
| ggPedigree.core | Core Function for ggPedigree |
| ggPedigreeInteractive | Interactive pedigree plot (Plotly wrapper around ggPedigree) |
| ggpedigree-package | ggpedigree: Visualizing Pedigrees with 'ggplot2' and 'plotly' |
| ggPhenotypeByDegree | Plot correlation of genetic relatedness by phenotype |
| ggPhenotypeByDegree.core | Core plotting function for ggPhenotypeByDegree This function... |
| ggRelatednessMatrix | Plot a relatedness matrix as a heatmap (ggpedigree style) |
| ggRelatednessMatrix.core | Core Function for ggRelatednessMatrix |
| kinship2_alignped1 | Align pedigree - Process a single subject and their spouses |
| kinship2_alignped2 | Align pedigree - Process a set of siblings |
| kinship2_alignped3 | Merge two aligned pedigree structures |
| kinship2_alignped4 | Compute optimal horizontal spacing for pedigree alignment |
| kinship2_align.pedigree | Align a pedigree for plotting |
| kinship2_autohint | Automatically generate alignment hints for pedigree plotting |
| kinship2_bitSize | Calculate the bit size of a pedigree |
| kinship2_check.hint | Check kinship2 hints for consistency |
| kinship2_duporder | Find all duplicated IDs on a level, and return |
| kinship2_kindepth | Calculate the depth (generation level) of subjects in a... |
| kinship2_plotPedigree | plotPedigree A wrapped function to plot simulated pedigree... |
| kinship2_shift | Shift a subject and his twins left or right among siblings... |
| optimizePedigree | Optimize Pedigree Plot |
| optimizePlotlyPedigree | Optimize Plotly Pedigree Plot |
| optimizeStaticPedigree | Optimize Static Pedigree Plot |
| pedigree | Create a pedigree or pedigreeList object |
| preparePedigreeData | Prepare Pedigree Data |
| processExtras | Process duplicate appearances of individuals in a pedigree... |
| recodeMissingIDs | Recode Missing IDs in Pedigree Data |
| redsquirrels | Kluane Red Squirrel Data |
| relink | Relink IDs to closest duplicate appearance based on... |
| transformPed | Process Pedigree Data |
| warsofroses | Wars of the Roses Pedigree Data |
