make_col_scheme: Create new sequence logo color scheme

In ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

Description

Create new sequence logo color scheme

Usage

make_col_scheme(chars = NULL, groups = NULL, cols = NULL, values = NULL,
  name = "")

Arguments

chars	Vector of one letter characters
groups	Vector of groups for letters with same length as chars (optional if cols parameter is provided)
cols	Vector of colors with same length as chars (optional if values parameter is provided)
values	Vector of numerical values with same length as chars
name	Name of color scheme

Examples

# Discrete color scheme examples
cs1 = make_col_scheme(chars=c('A', 'T', 'G', 'C'), groups=c('g1', 'g1', 'g2', 'g2'), 
                      cols=c('red', 'red', 'blue', 'blue'), name='custom1')

cs2 = make_col_scheme(chars=c('A', 'T', 'G', 'C'), cols=c('red', 'red', 'blue', 'blue'), 
                      name='custom2')

# Quantitative color scheme
cs3 = make_col_scheme(chars=c('A', 'T', 'G', 'C'), values=1:4, name='custom3')

ggseqlogo documentation built on May 2, 2019, 3:30 p.m.