gitter: Quantification of Pinned Microbial Cultures
Version 1.1.1

The goal of this package is to allow users to robustly and quickly grid and quantify sizes of pinned colonies in plate images. gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately. It includes several image pre-processing techniques, such as autorotation of plates, noise removal, contrast adjustment and image resizing.

Getting started

Package details

AuthorOmar Wagih, Leopold Parts
Date of publication2015-10-11 18:45:24
MaintainerOmar Wagih <wagih@ebi.ac.uk>
LicenseLGPL
Version1.1.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("gitter")

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gitter documentation built on May 29, 2017, 11:33 p.m.