gitter: Quantification of Pinned Microbial Cultures

The goal of this package is to allow users to robustly and quickly grid and quantify sizes of pinned colonies in plate images. gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately. It includes several image pre-processing techniques, such as autorotation of plates, noise removal, contrast adjustment and image resizing.

Install the latest version of this package by entering the following in R:
install.packages("gitter")
AuthorOmar Wagih, Leopold Parts
Date of publication2015-10-11 18:45:24
MaintainerOmar Wagih <wagih@ebi.ac.uk>
LicenseLGPL
Version1.1.1

View on CRAN

Files

inst
inst/extdata
inst/extdata/sample.jpg.dat
inst/extdata/sample_dead.jpg
inst/extdata/sample.jpg
NAMESPACE
R
R/plot.r R/Main.R R/Help.R R/Peaks.R R/io.r
README.md
MD5
build
build/BUILD.R
DESCRIPTION
man
man/plot.gitter.Rd man/gitter.demo.Rd man/summary.gitter.Rd man/plate.warnings.Rd man/gitter.Rd man/gitter.batch.Rd man/gitter.read.Rd
CHANGES

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.