The goal of this package is to allow users to robustly and quickly grid and quantify sizes of pinned colonies in plate images. gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately. It includes several image pre-processing techniques, such as autorotation of plates, noise removal, contrast adjustment and image resizing.
|Author||Omar Wagih, Leopold Parts|
|Date of publication||2015-10-11 18:45:24|
|Maintainer||Omar Wagih <email@example.com>|
gitter: Process a single plate image
gitter.batch: Process a batch set of plate images
gitter.demo: Run a demo of gitter
gitter.read: Read in a data file as a 'gitter' data object.
plate.warnings: Show any plate-level warnings associated with a 'gitter' data...
plot.gitter: Plot a gitter dat file
summary.gitter: View the summary of a gitter data file