glmmGS: Gauss-Seidel Generalized Linear Mixed Model solver

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Solve Generalized Linear Mixed Models using Gauss-Seidel algorithm

Author
Michele Morara, Louise Ryan, Subharup Guha, Christopher Paciorek
Date of publication
2014-01-05 12:25:00
Maintainer
Michele Morara<moraram@battelle.org>
License
GPL
Version
0.5-1
URLs

View on CRAN

Man pages

glmmGS
Fit Generalized Linear Mixed Models
glmmGS.Control
Construct control list for 'glmmGS' function
glmmGS.CovarianceModel
Construct covariance models for the 'glmmGS' function
glmmGS.SparseMatrix
Construct sparse matrix for 'glmmGS.CovarianceModel' function

Files in this package

glmmGS
glmmGS/src
glmmGS/src/Makevars
glmmGS/src/GlmmGSRAPI.h
glmmGS/src/GlmmGS
glmmGS/src/GlmmGS/Responses
glmmGS/src/GlmmGS/Responses/BinomialResponse.cpp
glmmGS/src/GlmmGS/Responses/IResponse.cpp
glmmGS/src/GlmmGS/Responses/BinomialResponse.h
glmmGS/src/GlmmGS/Responses/PoissonlResponse.cpp
glmmGS/src/GlmmGS/Responses/PoissonResponse.h
glmmGS/src/GlmmGS/Responses/IResponse.h
glmmGS/src/GlmmGS/Variables
glmmGS/src/GlmmGS/Variables/IVariable.cpp
glmmGS/src/GlmmGS/Variables/Intercept.cpp
glmmGS/src/GlmmGS/Variables/WeakVectorVariable.h
glmmGS/src/GlmmGS/Variables/IVariable.h
glmmGS/src/GlmmGS/Variables/Intercept.h
glmmGS/src/GlmmGS/Offsets
glmmGS/src/GlmmGS/Offsets/ZeroOffset.h
glmmGS/src/GlmmGS/Offsets/IOffset.cpp
glmmGS/src/GlmmGS/Offsets/WeakVectorOffset.h
glmmGS/src/GlmmGS/Offsets/IOffset.h
glmmGS/src/GlmmGS/Offsets/ZeroOffset.cpp
glmmGS/src/GlmmGS/Estimate.h
glmmGS/src/GlmmGS/RandomEffects
glmmGS/src/GlmmGS/RandomEffects/Working
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Coefficients.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/IdentityModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/Functions.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/ICovarianceModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/IdentityModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/PrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/Functions.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/PrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/SparsePrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/SparsePrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/CovarianceModels/ICovarianceModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Block.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters/Default.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters/Default.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters/RemoveMean.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters/RemoveMean.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Boosters/IBooster.h
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Coefficients.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Stratified/Block.h
glmmGS/src/GlmmGS/RandomEffects/Working/IBlock.h
glmmGS/src/GlmmGS/RandomEffects/Working/IBlock.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global
glmmGS/src/GlmmGS/RandomEffects/Working/Global/Coefficients.h
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/IdentityModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/ICovarianceModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/IdentityModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/PrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/PrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global/CovarianceModels/ICovarianceModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global/Block.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global/Coefficients.cpp
glmmGS/src/GlmmGS/RandomEffects/Working/Global/Block.h
glmmGS/src/GlmmGS/RandomEffects/Stratified
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/IdentityModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/ICovarianceModel.h
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/IdentityModel.h
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/PrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/PrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/SparsePrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/SparsePrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Stratified/CovarianceModels/ICovarianceModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Stratified/Block.cpp
glmmGS/src/GlmmGS/RandomEffects/Stratified/Block.h
glmmGS/src/GlmmGS/RandomEffects/IBlock.h
glmmGS/src/GlmmGS/RandomEffects/IBlock.cpp
glmmGS/src/GlmmGS/RandomEffects/Global
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/IdentityModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/ICovarianceModel.h
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/IdentityModel.h
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/PrecisionModel.h
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/PrecisionModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Global/CovarianceModels/ICovarianceModel.cpp
glmmGS/src/GlmmGS/RandomEffects/Global/Block.cpp
glmmGS/src/GlmmGS/RandomEffects/Global/Block.h
glmmGS/src/GlmmGS/GlmmGSSolver.cpp
glmmGS/src/GlmmGS/GlmmGS.h
glmmGS/src/GlmmGS/Controls.cpp
glmmGS/src/GlmmGS/Controls.h
glmmGS/src/GlmmGS/GlmmGS.cpp
glmmGS/src/GlmmGS/GlmmGSSolver.h
glmmGS/src/GlmmGS/FixedEffects
glmmGS/src/GlmmGS/FixedEffects/Working
glmmGS/src/GlmmGS/FixedEffects/Working/Stratified
glmmGS/src/GlmmGS/FixedEffects/Working/Stratified/Coefficients.h
glmmGS/src/GlmmGS/FixedEffects/Working/Stratified/Block.cpp
glmmGS/src/GlmmGS/FixedEffects/Working/Stratified/Coefficients.cpp
glmmGS/src/GlmmGS/FixedEffects/Working/Stratified/Block.h
glmmGS/src/GlmmGS/FixedEffects/Working/IBlock.h
glmmGS/src/GlmmGS/FixedEffects/Working/IBlock.cpp
glmmGS/src/GlmmGS/FixedEffects/Working/Global
glmmGS/src/GlmmGS/FixedEffects/Working/Global/Coefficients.h
glmmGS/src/GlmmGS/FixedEffects/Working/Global/Block.cpp
glmmGS/src/GlmmGS/FixedEffects/Working/Global/Coefficients.cpp
glmmGS/src/GlmmGS/FixedEffects/Working/Global/Block.h
glmmGS/src/GlmmGS/FixedEffects/Stratified
glmmGS/src/GlmmGS/FixedEffects/Stratified/Block.cpp
glmmGS/src/GlmmGS/FixedEffects/Stratified/Block.h
glmmGS/src/GlmmGS/FixedEffects/IBlock.h
glmmGS/src/GlmmGS/FixedEffects/IBlock.cpp
glmmGS/src/GlmmGS/FixedEffects/Global
glmmGS/src/GlmmGS/FixedEffects/Global/Block.cpp
glmmGS/src/GlmmGS/FixedEffects/Global/Block.h
glmmGS/src/GlmmGS/Standard.h
glmmGS/src/GlmmGS/Estimate.cpp
glmmGS/src/Utilities
glmmGS/src/Utilities/LinearAlgebra
glmmGS/src/Utilities/LinearAlgebra/LinearAlgebra.h
glmmGS/src/Utilities/LinearAlgebra/CholeskyDecomposition.h
glmmGS/src/Utilities/LinearAlgebra/MatrixFunctions.cpp
glmmGS/src/Utilities/LinearAlgebra/MatrixFunctions.h
glmmGS/src/Utilities/LinearAlgebra/VectorialCholeskyDecomposition.cpp
glmmGS/src/Utilities/LinearAlgebra/TriangularMatrixFunctions.h
glmmGS/src/Utilities/LinearAlgebra/TriangularMatrixFunctions.cpp
glmmGS/src/Utilities/LinearAlgebra/VectorFunctions.cpp
glmmGS/src/Utilities/LinearAlgebra/CholeskyDecomposition.cpp
glmmGS/src/Utilities/LinearAlgebra/VectorFunctions.h
glmmGS/src/Utilities/LinearAlgebra/VectorialCholeskyDecomposition.h
glmmGS/src/Utilities/Stack.h
glmmGS/src/Utilities/Container.h
glmmGS/src/Utilities/Pointer.h
glmmGS/src/Utilities/WeakFactor.h
glmmGS/src/Utilities/WeakFactor.cpp
glmmGS/src/Utilities/Comparer.h
glmmGS/src/Utilities/ReferenceCounter.h
glmmGS/src/Utilities/Matrix.h
glmmGS/src/Utilities/NewTypes
glmmGS/src/Utilities/NewTypes/Array.h
glmmGS/src/Utilities/NewTypes/Functions.cpp
glmmGS/src/Utilities/NewTypes/Matrix.h
glmmGS/src/Utilities/NewTypes/Globals.h
glmmGS/src/Utilities/NewTypes/Functions.h
glmmGS/src/Utilities/NewTypes/NewTypes.h
glmmGS/src/Utilities/NewTypes/ArrayCast.h
glmmGS/src/Utilities/NewTypes/Vector.h
glmmGS/src/Utilities/NewTypes/External.h
glmmGS/src/Utilities/NewTypes/Cast.h
glmmGS/src/Utilities/New.h
glmmGS/src/Utilities/Exceptions
glmmGS/src/Utilities/Exceptions/Exceptions.h
glmmGS/src/Utilities/Exceptions/InvalidOperationException.h
glmmGS/src/Utilities/Exceptions/MaxIterationsException.h
glmmGS/src/Utilities/Exceptions/Exception.h
glmmGS/src/Utilities/Exceptions/IntegerOverflowException.h
glmmGS/src/Utilities/Exceptions/StackUnderflowException.h
glmmGS/src/Utilities/Exceptions/Exception.cpp
glmmGS/src/Utilities/Exceptions/OutOfMemoryException.h
glmmGS/src/Utilities/Exceptions/InvalidArgumentException.h
glmmGS/src/Utilities/Exceptions/Assertions.h
glmmGS/src/Utilities/Exceptions/OverflowException.h
glmmGS/src/Utilities/Exceptions/NumericException.h
glmmGS/src/Utilities/Exceptions/RoundoffException.h
glmmGS/src/Utilities/ReferenceCounter.cpp
glmmGS/src/Utilities/WeakString.cpp
glmmGS/src/Utilities/Algorithms.h
glmmGS/src/Utilities/WeakMatrix.h
glmmGS/src/Utilities/Statistics
glmmGS/src/Utilities/Statistics/StatisticFunctions.cpp
glmmGS/src/Utilities/Statistics/StatisticFunctions.h
glmmGS/src/Utilities/TriangularMatrix.h
glmmGS/src/Utilities/IO
glmmGS/src/Utilities/IO/Print.h
glmmGS/src/Utilities/IO/BasicPrint.h
glmmGS/src/Utilities/IO/Stream.cpp
glmmGS/src/Utilities/IO/Stream.h
glmmGS/src/Utilities/IO/IO.h
glmmGS/src/Utilities/WeakString.h
glmmGS/src/Utilities/Comparer.cpp
glmmGS/src/Utilities/Allocator.h
glmmGS/src/Utilities/New.cpp
glmmGS/src/Utilities/LDL
glmmGS/src/Utilities/LDL/SparseCholeskyDecomposition.h
glmmGS/src/Utilities/LDL/LDL.h
glmmGS/src/Utilities/LDL/SparseCholeskyDecomposition.cpp
glmmGS/src/Utilities/LDL/Internal
glmmGS/src/Utilities/LDL/Internal/ldl.cpp
glmmGS/src/Utilities/LDL/Internal/amd_global.c
glmmGS/src/Utilities/LDL/Internal/amd_aat.c
glmmGS/src/Utilities/LDL/Internal/amd.h
glmmGS/src/Utilities/LDL/Internal/amd_info.c
glmmGS/src/Utilities/LDL/Internal/amd_internal.h
glmmGS/src/Utilities/LDL/Internal/amd_preprocess.c
glmmGS/src/Utilities/LDL/Internal/amd_postorder.c
glmmGS/src/Utilities/LDL/Internal/amd_control.c
glmmGS/src/Utilities/LDL/Internal/amd_order.c
glmmGS/src/Utilities/LDL/Internal/amd_dump.c
glmmGS/src/Utilities/LDL/Internal/amd_defaults.c
glmmGS/src/Utilities/LDL/Internal/amd_valid.c
glmmGS/src/Utilities/LDL/Internal/ldl.h
glmmGS/src/Utilities/LDL/Internal/UFconfig.h
glmmGS/src/Utilities/LDL/Internal/amd_1.c
glmmGS/src/Utilities/LDL/Internal/amd_2.c
glmmGS/src/Utilities/LDL/Internal/amd_post_tree.c
glmmGS/src/Utilities/LDL/SparseMatrix.h
glmmGS/src/Utilities/Buffer.cpp
glmmGS/src/Utilities/WeakVector.h
glmmGS/src/Utilities/Utilities.h
glmmGS/src/Utilities/Vector.h
glmmGS/src/Utilities/Buffer.h
glmmGS/src/Utilities/Math
glmmGS/src/Utilities/Math/Math.h
glmmGS/src/Utilities/Math/Math.cpp
glmmGS/src/Utilities/VectorAlgorithms.h
glmmGS/src/GlmmGSRAPI.cpp
glmmGS/src/GlmmGSAPI
glmmGS/src/GlmmGSAPI/GlmmGSAPI.cpp
glmmGS/src/GlmmGSAPI/GlmmGSAPI.h
glmmGS/src/GlmmGSAPI/Responses
glmmGS/src/GlmmGSAPI/Responses/BinomialResponseSection.h
glmmGS/src/GlmmGSAPI/Responses/BinomialResponseSection.cpp
glmmGS/src/GlmmGSAPI/Responses/PoissonResponseSection.h
glmmGS/src/GlmmGSAPI/Responses/PoissonResponseSection.cpp
glmmGS/src/GlmmGSAPI/Exceptions
glmmGS/src/GlmmGSAPI/Exceptions/Exceptions.h
glmmGS/src/GlmmGSAPI/RandomEffects
glmmGS/src/GlmmGSAPI/RandomEffects/RandomEffectsSection.cpp
glmmGS/src/GlmmGSAPI/RandomEffects/Stratified
glmmGS/src/GlmmGSAPI/RandomEffects/Stratified/BlockSection.cpp
glmmGS/src/GlmmGSAPI/RandomEffects/Stratified/BlockSection.h
glmmGS/src/GlmmGSAPI/RandomEffects/RandomEffectsSection.h
glmmGS/src/GlmmGSAPI/RandomEffects/Global
glmmGS/src/GlmmGSAPI/RandomEffects/Global/BlockSection.cpp
glmmGS/src/GlmmGSAPI/RandomEffects/Global/BlockSection.h
glmmGS/src/GlmmGSAPI/Section.h
glmmGS/src/GlmmGSAPI/FixedEffects
glmmGS/src/GlmmGSAPI/FixedEffects/FixedEffectsSection.cpp
glmmGS/src/GlmmGSAPI/FixedEffects/FixedEffectsSection.h
glmmGS/src/GlmmGSAPI/FixedEffects/Stratified
glmmGS/src/GlmmGSAPI/FixedEffects/Stratified/BlockSection.cpp
glmmGS/src/GlmmGSAPI/FixedEffects/Stratified/BlockSection.h
glmmGS/src/GlmmGSAPI/FixedEffects/Global
glmmGS/src/GlmmGSAPI/FixedEffects/Global/BlockSection.cpp
glmmGS/src/GlmmGSAPI/FixedEffects/Global/BlockSection.h
glmmGS/src/GlmmGSAPI/Section.cpp
glmmGS/src/GlmmGSAPI/Standard.h
glmmGS/NAMESPACE
glmmGS/R
glmmGS/R/glmmGSParser.R
glmmGS/R/glmmGS.R
glmmGS/R/zzz.R
glmmGS/R/glmmGSAPI.R
glmmGS/MD5
glmmGS/DESCRIPTION
glmmGS/man
glmmGS/man/glmmGS.SparseMatrix.Rd
glmmGS/man/glmmGS.CovarianceModel.Rd
glmmGS/man/glmmGS.Control.Rd
glmmGS/man/glmmGS.Rd