API for glmmrBase
Generalised Linear Mixed Models in R
| Global functions | |
|---|---|
| Beta | Man page Source code |
| Covariance | Man page |
| Covariance__B | Source code |
| Covariance__D | Source code |
| Covariance__D_chol | Source code |
| Covariance__LZWZL | Source code |
| Covariance__Q | Source code |
| Covariance__Update_parameters | Source code |
| Covariance__Z | Source code |
| Covariance__ZL | Source code |
| Covariance__any_gr | Source code |
| Covariance__get_val | Source code |
| Covariance__log_determinant | Source code |
| Covariance__log_likelihood | Source code |
| Covariance__make_dense | Source code |
| Covariance__make_sparse | Source code |
| Covariance__n_cov_pars | Source code |
| Covariance__new | Source code |
| Covariance__parameter_fn_index | Source code |
| Covariance__re_count | Source code |
| Covariance__re_terms | Source code |
| Covariance__set_nn | Source code |
| Covariance__simulate_re | Source code |
| Covariance__submatrix | Source code |
| Covariance_hsgp__new | Source code |
| Covariance_hsgp__set_approx_pars | Source code |
| Covariance_nngp__new | Source code |
| Linpred__any_nonlinear | Source code |
| Linpred__beta_names | Source code |
| Linpred__new | Source code |
| Linpred__update_pars | Source code |
| Linpred__x | Source code |
| Linpred__xb | Source code |
| MeanFunction | Man page |
| Model | Man page |
| ModelBits__new | Source code |
| ModelBits__update_beta | Source code |
| ModelBits__update_theta | Source code |
| Model__D | Source code |
| Model__D_chol | Source code |
| Model__L | Source code |
| Model__P | Source code |
| Model__Q | Source code |
| Model__Sigma | Source code |
| Model__X | Source code |
| Model__Z | Source code |
| Model__ZL | Source code |
| Model__Z_needs_updating | Source code |
| Model__Zu | Source code |
| Model__aic | Source code |
| Model__any_nonlinear | Source code |
| Model__beta_parameter_names | Source code |
| Model__box | Source code |
| Model__cov_deriv | Source code |
| Model__cov_set_nn | Source code |
| Model__get_W | Source code |
| Model__get_beta | Source code |
| Model__get_fn_counter | Source code |
| Model__get_log_likelihood_values | Source code |
| Model__get_theta | Source code |
| Model__get_var_par | Source code |
| Model__get_variance | Source code |
| Model__infomat_theta | Source code |
| Model__information_matrix | Source code |
| Model__information_matrix_crude | Source code |
| Model__kenward_roger | Source code |
| Model__laplace_beta_u | Source code |
| Model__laplace_ml_beta_theta | Source code |
| Model__laplace_ml_beta_u | Source code |
| Model__laplace_ml_theta | Source code |
| Model__laplace_nr_beta_u | Source code |
| Model__linear_predictor | Source code |
| Model__ll_diff_variance | Source code |
| Model__log_gradient | Source code |
| Model__log_likelihood | Source code |
| Model__log_prob | Source code |
| Model__make_dense | Source code |
| Model__make_sparse | Source code |
| Model__marginal | Source code |
| Model__mcmc_sample | Source code |
| Model__mcmc_set_lambda | Source code |
| Model__mcmc_set_max_steps | Source code |
| Model__mcmc_set_refresh | Source code |
| Model__mcmc_set_target_accept | Source code |
| Model__ml_all | Source code |
| Model__ml_beta | Source code |
| Model__ml_theta | Source code |
| Model__n_cov_pars | Source code |
| Model__new | Source code |
| Model__new_w_pars | Source code |
| Model__nr_beta | Source code |
| Model__obs_information_matrix | Source code |
| Model__observed_information_matrix | Source code |
| Model__parameter_fn_index | Source code |
| Model__predict | Source code |
| Model__predict_re | Source code |
| Model__print_instructions | Source code |
| Model__print_names | Source code |
| Model__re_count | Source code |
| Model__re_terms | Source code |
| Model__reset_fn_counter | Source code |
| Model__residuals | Source code |
| Model__sandwich | Source code |
| Model__set_bobyqa_control | Source code |
| Model__set_bound | Source code |
| Model__set_direct_control | Source code |
| Model__set_lbfgs_control | Source code |
| Model__set_offset | Source code |
| Model__set_quantile | Source code |
| Model__set_sml_parameters | Source code |
| Model__set_trace | Source code |
| Model__set_trials | Source code |
| Model__set_var_par | Source code |
| Model__set_weights | Source code |
| Model__set_y | Source code |
| Model__simulate_re | Source code |
| Model__small_sample_correction | Source code |
| Model__test_lbfgs | Source code |
| Model__test_lbfgs_laplace | Source code |
| Model__test_lbfgs_theta | Source code |
| Model__theta_parameter_names | Source code |
| Model__theta_size | Source code |
| Model__u | Source code |
| Model__u_diagnostic | Source code |
| Model__u_log_likelihood | Source code |
| Model__update_W | Source code |
| Model__update_beta | Source code |
| Model__update_theta | Source code |
| Model__update_u | Source code |
| Model__use_attenuation | Source code |
| Model__use_reml | Source code |
| Model__xb | Source code |
| Model__y | Source code |
| Model_hsgp__dim | Source code |
| Model_hsgp__new | Source code |
| Model_hsgp__new_w_pars | Source code |
| Model_hsgp__set_approx_pars | Source code |
| Model_nngp__new | Source code |
| Model_nngp__new_w_pars | Source code |
| Quantile | Man page Source code |
| Salamanders | Man page |
| SimGeospat | Man page |
| SimTrial | Man page |
| attenuate_xb | Source code |
| coef.Model | Man page Source code |
| coef.mcml | Man page Source code |
| confint.mcml | Man page Source code |
| cross_df | Man page Source code |
| cycles | Man page Source code |
| dlinkdeta | Source code |
| family.Model | Man page Source code |
| family.mcml | Man page Source code |
| fitted.Model | Man page Source code |
| fitted.mcml | Man page Source code |
| fixed.effects | Man page Source code |
| formula.Model | Man page Source code |
| formula.mcml | Man page Source code |
| get_variable_names | Source code |
| girling_algorithm | Source code |
| glmmrBase | Man page |
| glmmrBase-package | Man page |
| hessian_from_formula | Man page Source code |
| lme4_to_glmmr | Man page Source code |
| logLik.Model | Man page Source code |
| logLik.mcml | Man page Source code |
| match_rows | Man page Source code |
| mcml_glmer | Man page Source code |
| mcml_lmer | Man page Source code |
| mcnr_family | Man page Source code |
| near_semi_pd | Source code |
| nelder | Man page Source code |
| nest_df | Man page Source code |
| predict.Model | Man page Source code |
| predict.mcml | Man page Source code |
| print.mcml | Man page Source code |
| progress_bar | Man page Source code |
| random.effects | Man page Source code |
| re_names | Source code |
| residuals.Model | Man page Source code |
| residuals.mcml | Man page Source code |
| setParallel | Man page Source code |
| summary.Model | Man page Source code |
| summary.mcml | Man page Source code |
| vcov.Model | Man page Source code |
| vcov.mcml | Man page Source code |
