globalGSA: Global Gene-Set Analysis for Association Studies.

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Implementation of three different Gene set analysis (GSA) algorithms for combining the individual pvalues of a set of genetic variats (SNPs) in a gene level pvalue. The implementation includes the selection of the best inheritance model for each SNP.

Author
Natalia Vilor, M.Luz Calle
Date of publication
2013-10-23 23:52:23
Maintainer
Natalia Vilor <natalia.vilor@uvic.cat>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

globalARTP
Global Adaptive Rank Truncated Product method.
globalFisher
Global Fisher combination method.
globalGSA-package
Gene-set analysis for combining p-values in a joint test of...
globalSimes
Global Simes' combination method.

Files in this package

globalGSA
globalGSA/NAMESPACE
globalGSA/data
globalGSA/data/ans31.rda
globalGSA/data/ans2.rda
globalGSA/data/ans3.rda
globalGSA/data/ans11.rda
globalGSA/data/ans1.rda
globalGSA/data/ans21.rda
globalGSA/data/gene_list.rda
globalGSA/data/data.rda
globalGSA/R
globalGSA/R/Codcodom.R
globalGSA/R/Codrec.R
globalGSA/R/GeneratePvalues.R
globalGSA/R/globalGSA-internal.R
globalGSA/R/Coddom.R
globalGSA/R/globalFisher.R
globalGSA/R/Codadd.R
globalGSA/R/globalSimes.R
globalGSA/R/Trunkpoint.R
globalGSA/R/pvalFmla.R
globalGSA/R/CreateFormula.R
globalGSA/R/EstimatePvalue.R
globalGSA/R/runPermut.R
globalGSA/R/runPvalues.R
globalGSA/R/globalARTP.R
globalGSA/R/Selected_genes.R
globalGSA/R/ff.R
globalGSA/MD5
globalGSA/DESCRIPTION
globalGSA/man
globalGSA/man/globalARTP.Rd
globalGSA/man/globalFisher.Rd
globalGSA/man/globalSimes.Rd
globalGSA/man/globalGSA-package.Rd