gmum.r: GMUM Machine Learning Group Package

Direct R interface to Support Vector Machine libraries ('LIBSVM' and 'SVMLight') and efficient C++ implementations of Growing Neural Gas and models developed by 'GMUM' group (Cross Entropy Clustering and 2eSVM).

AuthorWojciech Czarnecki, Stanislaw Jastrzebski, Marcin Data, Igor Sieradzki, Mateusz Bruno-Kaminski, Karol Jurek, Piotr Kowenzowski, Michal Pletty, Konrad Talik, Maciej Zgliczynski
Date of publication2015-10-04 23:41:44
MaintainerStanislaw Jastrzebski <staszek.jastrzebski@gmail.com>
LicenseMIT + file LICENSE
Version0.2.1
https://github.com/gmum/gmum.r

View on CRAN

Man pages

calculateCentroids: calculateCentroids

caret.gmumSvmLinear: Caret model representation for SVM with linear kernel

caret.gmumSvmPoly: Caret model representation for SVM with linear kernel

caret.gmumSvmRadial: Caret model representation for SVM with radial kernel

CEC: Cross-Entropy Clustering

cec.ellipsegauss: cec.ellipsegauss

cec.ellipsegauss.extra: cec.ellipsegauss.extra

cec.mouse1.spherical: cec.mouse1.spherical

cec.mouse1.spherical.extra: cec.mouse1.spherical.extra

centers: centers

clustering-methods: clustering

convertToIGraph: convertToIGraph

covMatrix: covMatrix

energy: energy

errorStatistics: errorStatistics

findClosests: findClosests

getDataset: getDataset

get.wine.dataset.X: get.wine.dataset.X

get.wine.dataset.y: get.wine.dataset.y

gng: Constructor of GrowingNeuralGas object.

gngLoad: gngLoad

gng.plot.layout.v2d: Use first two spatial coordinates as position in layout

gng.preset.cube: gng.preset.cube

gng.preset.plane: gng.preset.plane

gng.preset.sphere: gng.preset.sphere

gngSave: gngSave

insertExamples: insertExamples

isRunning: isRunning

iterations: iterations

logClusters: logClusters

logEnergy: logEnergy

meanError: meanError

MultiClassSVM-class: Class MultiClassSVM

node-methods: node

numberNodes: numberNodes

optimized-gng: Constructor of Optimized GrowingNeuralGas object.

pause: pause

plot.cec: plot

plot.gng: plot GNG object

plot.svm: Plot SVM object

predict.cec: predict

predictComponent-methods: predictComponent

predict.gng: predict

predict.svm: Predict using SVM object

print.cec: print

print.gng: print

print.svm: Print SVM object

Rcpp_CecConfiguration-class: Class Rcpp_CecConfiguration.

Rcpp_CecModel-class: Class Rcpp_CecModel.

Rcpp_GNGServer-class: Class Rcpp_GNGServer.

Rcpp_SVMClient-class: Class Rcpp_SVMClient.

runAll: runAll

run-methods: run

runOneIteration: runOneIteration

summary.cec: summary

summary.gng: summary

summary.svm: Summary of SVM object

svm: Create SVM object

svm.accuracy: Measure accuracy scoreof a prediction

svm.breastcancer.dataset: svm.breastcancer.dataset

svm.transduction: svm.transduction

terminate-methods: terminate

Tset: Tset

Files in this package

gmum.r
gmum.r/inst
gmum.r/inst/dev
gmum.r/inst/dev/datasets
gmum.r/inst/dev/datasets/cec
gmum.r/inst/dev/datasets/cec/cec_txt_to_RData.R
gmum.r/inst/dev/datasets/svm
gmum.r/inst/dev/datasets/svm/convert_to_RData.R
gmum.r/inst/include
gmum.r/inst/include/cec
gmum.r/inst/include/cec/kmeanspp_assignment.hpp
gmum.r/inst/include/cec/cluster.hpp
gmum.r/inst/include/cec/params.hpp
gmum.r/inst/include/cec/const.hpp
gmum.r/inst/include/cec/hartigan.hpp
gmum.r/inst/include/cec/cec_configuration.hpp
gmum.r/inst/include/cec/cec.hpp
gmum.r/inst/include/cec/algorithm.hpp
gmum.r/inst/include/cec/cluster_custom_function.hpp
gmum.r/inst/include/cec/cluster_params.hpp
gmum.r/inst/include/cec/assignment.hpp
gmum.r/inst/include/cec/exceptions.hpp
gmum.r/inst/include/cec/random_assignment.hpp
gmum.r/inst/include/cec/centroids_assignment.hpp
gmum.r/inst/include/svmlight
gmum.r/inst/include/svmlight/Makefile
gmum.r/inst/include/svmlight/svm_learn_main.c
gmum.r/inst/include/svmlight/svm_learn.h
gmum.r/inst/include/svmlight/LICENSE.txt
gmum.r/inst/include/svmlight/svm_classify.c
gmum.r/inst/include/svmlight/svm_common.h
gmum.r/inst/include/svmlight/kernel.h
gmum.r/inst/include/svmlight/svm_loqo.c
gmum.r/inst/include/svm
gmum.r/inst/include/svm/two_e_svm_post.h
gmum.r/inst/include/svm/svm_client.h
gmum.r/inst/include/svm/svm.h
gmum.r/inst/include/svm/svmlight_runner.h
gmum.r/inst/include/svm/svm_handler.h
gmum.r/inst/include/svm/two_e_svm_pre.h
gmum.r/inst/include/svm/libsvm_runner.h
gmum.r/inst/include/svm/svm_basic.h
gmum.r/inst/include/svm/svm_utils.h
gmum.r/inst/include/gng
gmum.r/inst/include/gng/gng_lazy_error_heap.h
gmum.r/inst/include/gng/gng_defines.h
gmum.r/inst/include/gng/gng_configuration.h
gmum.r/inst/include/gng/gng_server.h
gmum.r/inst/include/gng/gng_graph.hpp
gmum.r/inst/include/gng/heap.h
gmum.r/inst/include/gng/uniform_grid.hpp
gmum.r/inst/include/gng/gng_graph.h
gmum.r/inst/include/gng/gng.h
gmum.r/inst/include/gng/gng_node.h
gmum.r/inst/include/gng/gng_dataset.h
gmum.r/inst/include/gng/uniform_grid.h
gmum.r/inst/include/gng/globals.h
gmum.r/inst/include/gng/gng_algorithm.h
gmum.r/inst/include/utils
gmum.r/inst/include/utils/cutils.h
gmum.r/inst/include/utils/circular_buffer.h
gmum.r/inst/include/utils/utils.h
gmum.r/inst/include/utils/tinythread.h
gmum.r/inst/include/utils/threading.h
gmum.r/inst/include/utils/logger.h
gmum.r/inst/include/utils/fast_mutex.h
gmum.r/src
gmum.r/src/Makevars
gmum.r/src/cec
gmum.r/src/cec/assignment.cpp
gmum.r/src/cec/cec.cpp
gmum.r/src/cec/cec_configuration.cpp
gmum.r/src/cec/cluster_custom_function.cpp
gmum.r/src/cec/hartigan.cpp
gmum.r/src/cec/centroids_assignment.cpp
gmum.r/src/cec/random_assignment.cpp
gmum.r/src/cec/cluster.cpp
gmum.r/src/cec/kmeanspp_assignment.cpp
gmum.r/src/cec/cec_module.cpp
gmum.r/src/svmlight
gmum.r/src/svmlight/svm_hideo.c
gmum.r/src/svmlight/svm_common.c
gmum.r/src/svmlight/svm_learn.c
gmum.r/src/svm
gmum.r/src/svm/svm_basic.cpp
gmum.r/src/svm/two_e_svm_post.cpp
gmum.r/src/svm/libsvm_runner.cpp
gmum.r/src/svm/svm_utils.cpp
gmum.r/src/svm/svmlight_runner.cpp
gmum.r/src/svm/validator_runner.cpp
gmum.r/src/svm/svm_client.cpp
gmum.r/src/svm/two_e_svm_pre.cpp
gmum.r/src/svm/svm.cpp
gmum.r/src/svm/svm_wrapper_module.cpp
gmum.r/src/gng
gmum.r/src/gng/gng_configuration.cpp
gmum.r/src/gng/gng_algorithm.cpp
gmum.r/src/gng/gng_module.cpp
gmum.r/src/gng/gng_server.cpp
gmum.r/src/Makevars.win
gmum.r/src/root.cpp
gmum.r/src/utils
gmum.r/src/utils/tinythread.cpp
gmum.r/src/utils/utils.cpp
gmum.r/src/utils/threading.cpp
gmum.r/NAMESPACE
gmum.r/demo
gmum.r/demo/svm-demo.R
gmum.r/demo/extra
gmum.r/demo/extra/mnist.R
gmum.r/demo/extra/tfml_demo.R
gmum.r/demo/cec.R
gmum.r/demo/00Index
gmum.r/data
gmum.r/data/cec.mouse1.spherical.RData
gmum.r/data/cec.ellipsegauss.RData
gmum.r/data/svm.transduction.RData
gmum.r/data/cec.tset.RData
gmum.r/data/svm_breast_cancer_dataset.RData
gmum.r/R
gmum.r/R/gmum.errors.R gmum.r/R/gmum.R gmum.r/R/gng.R gmum.r/R/cec.summary.R gmum.r/R/cec.R gmum.r/R/cec.print.R gmum.r/R/svm.utils.R
gmum.r/R/R_scripts
gmum.r/R/R_scripts/bigDataGenerator.R gmum.r/R/R_scripts/comparative.tests.R
gmum.r/R/R_scripts/mouseUniformGenerator.R
gmum.r/R/R_scripts/wine_dataset.R
gmum.r/R/R_scripts/mouseUniformGeneratorNew.R
gmum.r/R/R_scripts/energy.R gmum.r/R/R_scripts/comparative.tests.2e.R gmum.r/R/R_scripts/mouseGaussGenerator.R gmum.r/R/R_scripts/test_cec_energy_func.R gmum.r/R/R_scripts/gaussGenerator.R gmum.r/R/R_scripts/3DDataGenerator.R gmum.r/R/cec.plot.R gmum.r/R/svm.R gmum.r/R/misc.R gmum.r/R/gng.visualize.R gmum.r/R/gng.presets.R gmum.r/R/gng.utils.R
gmum.r/MD5
gmum.r/DESCRIPTION
gmum.r/man
gmum.r/man/runOneIteration.Rd gmum.r/man/Rcpp_CecConfiguration-class.Rd gmum.r/man/terminate-methods.Rd gmum.r/man/print.svm.Rd gmum.r/man/optimized-gng.Rd gmum.r/man/logEnergy.Rd gmum.r/man/iterations.Rd gmum.r/man/energy.Rd gmum.r/man/gng.plot.layout.v2d.Rd gmum.r/man/summary.cec.Rd gmum.r/man/cec.ellipsegauss.Rd gmum.r/man/predictComponent-methods.Rd gmum.r/man/findClosests.Rd gmum.r/man/isRunning.Rd gmum.r/man/svm.accuracy.Rd gmum.r/man/numberNodes.Rd gmum.r/man/errorStatistics.Rd gmum.r/man/Tset.Rd gmum.r/man/gngLoad.Rd gmum.r/man/predict.cec.Rd gmum.r/man/gng.preset.cube.Rd gmum.r/man/print.cec.Rd gmum.r/man/caret.gmumSvmRadial.Rd gmum.r/man/run-methods.Rd gmum.r/man/pause.Rd gmum.r/man/runAll.Rd gmum.r/man/getDataset.Rd gmum.r/man/get.wine.dataset.X.Rd gmum.r/man/get.wine.dataset.y.Rd gmum.r/man/gng.preset.plane.Rd gmum.r/man/covMatrix.Rd gmum.r/man/svm.breastcancer.dataset.Rd gmum.r/man/cec.ellipsegauss.extra.Rd gmum.r/man/plot.svm.Rd gmum.r/man/CEC.Rd gmum.r/man/meanError.Rd gmum.r/man/predict.gng.Rd gmum.r/man/summary.svm.Rd gmum.r/man/caret.gmumSvmPoly.Rd gmum.r/man/centers.Rd gmum.r/man/Rcpp_GNGServer-class.Rd gmum.r/man/summary.gng.Rd gmum.r/man/gng.Rd gmum.r/man/node-methods.Rd gmum.r/man/plot.gng.Rd gmum.r/man/Rcpp_SVMClient-class.Rd gmum.r/man/convertToIGraph.Rd gmum.r/man/insertExamples.Rd gmum.r/man/logClusters.Rd gmum.r/man/clustering-methods.Rd gmum.r/man/cec.mouse1.spherical.extra.Rd gmum.r/man/calculateCentroids.Rd gmum.r/man/svm.Rd gmum.r/man/gngSave.Rd gmum.r/man/cec.mouse1.spherical.Rd gmum.r/man/gng.preset.sphere.Rd gmum.r/man/predict.svm.Rd gmum.r/man/svm.transduction.Rd gmum.r/man/plot.cec.Rd gmum.r/man/print.gng.Rd gmum.r/man/MultiClassSVM-class.Rd gmum.r/man/Rcpp_CecModel-class.Rd gmum.r/man/caret.gmumSvmLinear.Rd
gmum.r/LICENSE

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