gmum.r: GMUM Machine Learning Group Package

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Direct R interface to Support Vector Machine libraries ('LIBSVM' and 'SVMLight') and efficient C++ implementations of Growing Neural Gas and models developed by 'GMUM' group (Cross Entropy Clustering and 2eSVM).

Author
Wojciech Czarnecki, Stanislaw Jastrzebski, Marcin Data, Igor Sieradzki, Mateusz Bruno-Kaminski, Karol Jurek, Piotr Kowenzowski, Michal Pletty, Konrad Talik, Maciej Zgliczynski
Date of publication
2015-10-04 23:41:44
Maintainer
Stanislaw Jastrzebski <staszek.jastrzebski@gmail.com>
License
MIT + file LICENSE
Version
0.2.1
URLs

View on CRAN

Man pages

calculateCentroids
calculateCentroids
caret.gmumSvmLinear
Caret model representation for SVM with linear kernel
caret.gmumSvmPoly
Caret model representation for SVM with linear kernel
caret.gmumSvmRadial
Caret model representation for SVM with radial kernel
CEC
Cross-Entropy Clustering
cec.ellipsegauss
cec.ellipsegauss
cec.ellipsegauss.extra
cec.ellipsegauss.extra
cec.mouse1.spherical
cec.mouse1.spherical
cec.mouse1.spherical.extra
cec.mouse1.spherical.extra
centers
centers
clustering-methods
clustering
convertToIGraph
convertToIGraph
covMatrix
covMatrix
energy
energy
errorStatistics
errorStatistics
findClosests
findClosests
getDataset
getDataset
get.wine.dataset.X
get.wine.dataset.X
get.wine.dataset.y
get.wine.dataset.y
gng
Constructor of GrowingNeuralGas object.
gngLoad
gngLoad
gng.plot.layout.v2d
Use first two spatial coordinates as position in layout
gng.preset.cube
gng.preset.cube
gng.preset.plane
gng.preset.plane
gng.preset.sphere
gng.preset.sphere
gngSave
gngSave
insertExamples
insertExamples
isRunning
isRunning
iterations
iterations
logClusters
logClusters
logEnergy
logEnergy
meanError
meanError
MultiClassSVM-class
Class MultiClassSVM
node-methods
node
numberNodes
numberNodes
optimized-gng
Constructor of Optimized GrowingNeuralGas object.
pause
pause
plot.cec
plot
plot.gng
plot GNG object
plot.svm
Plot SVM object
predict.cec
predict
predictComponent-methods
predictComponent
predict.gng
predict
predict.svm
Predict using SVM object
print.cec
print
print.gng
print
print.svm
Print SVM object
Rcpp_CecConfiguration-class
Class Rcpp_CecConfiguration.
Rcpp_CecModel-class
Class Rcpp_CecModel.
Rcpp_GNGServer-class
Class Rcpp_GNGServer.
Rcpp_SVMClient-class
Class Rcpp_SVMClient.
runAll
runAll
run-methods
run
runOneIteration
runOneIteration
summary.cec
summary
summary.gng
summary
summary.svm
Summary of SVM object
svm
Create SVM object
svm.accuracy
Measure accuracy scoreof a prediction
svm.breastcancer.dataset
svm.breastcancer.dataset
svm.transduction
svm.transduction
terminate-methods
terminate
Tset
Tset

Files in this package

gmum.r
gmum.r/inst
gmum.r/inst/dev
gmum.r/inst/dev/datasets
gmum.r/inst/dev/datasets/cec
gmum.r/inst/dev/datasets/cec/cec_txt_to_RData.R
gmum.r/inst/dev/datasets/svm
gmum.r/inst/dev/datasets/svm/convert_to_RData.R
gmum.r/inst/include
gmum.r/inst/include/cec
gmum.r/inst/include/cec/kmeanspp_assignment.hpp
gmum.r/inst/include/cec/cluster.hpp
gmum.r/inst/include/cec/params.hpp
gmum.r/inst/include/cec/const.hpp
gmum.r/inst/include/cec/hartigan.hpp
gmum.r/inst/include/cec/cec_configuration.hpp
gmum.r/inst/include/cec/cec.hpp
gmum.r/inst/include/cec/algorithm.hpp
gmum.r/inst/include/cec/cluster_custom_function.hpp
gmum.r/inst/include/cec/cluster_params.hpp
gmum.r/inst/include/cec/assignment.hpp
gmum.r/inst/include/cec/exceptions.hpp
gmum.r/inst/include/cec/random_assignment.hpp
gmum.r/inst/include/cec/centroids_assignment.hpp
gmum.r/inst/include/svmlight
gmum.r/inst/include/svmlight/Makefile
gmum.r/inst/include/svmlight/svm_learn_main.c
gmum.r/inst/include/svmlight/svm_learn.h
gmum.r/inst/include/svmlight/LICENSE.txt
gmum.r/inst/include/svmlight/svm_classify.c
gmum.r/inst/include/svmlight/svm_common.h
gmum.r/inst/include/svmlight/kernel.h
gmum.r/inst/include/svmlight/svm_loqo.c
gmum.r/inst/include/svm
gmum.r/inst/include/svm/two_e_svm_post.h
gmum.r/inst/include/svm/svm_client.h
gmum.r/inst/include/svm/svm.h
gmum.r/inst/include/svm/svmlight_runner.h
gmum.r/inst/include/svm/svm_handler.h
gmum.r/inst/include/svm/two_e_svm_pre.h
gmum.r/inst/include/svm/libsvm_runner.h
gmum.r/inst/include/svm/svm_basic.h
gmum.r/inst/include/svm/svm_utils.h
gmum.r/inst/include/gng
gmum.r/inst/include/gng/gng_lazy_error_heap.h
gmum.r/inst/include/gng/gng_defines.h
gmum.r/inst/include/gng/gng_configuration.h
gmum.r/inst/include/gng/gng_server.h
gmum.r/inst/include/gng/gng_graph.hpp
gmum.r/inst/include/gng/heap.h
gmum.r/inst/include/gng/uniform_grid.hpp
gmum.r/inst/include/gng/gng_graph.h
gmum.r/inst/include/gng/gng.h
gmum.r/inst/include/gng/gng_node.h
gmum.r/inst/include/gng/gng_dataset.h
gmum.r/inst/include/gng/uniform_grid.h
gmum.r/inst/include/gng/globals.h
gmum.r/inst/include/gng/gng_algorithm.h
gmum.r/inst/include/utils
gmum.r/inst/include/utils/cutils.h
gmum.r/inst/include/utils/circular_buffer.h
gmum.r/inst/include/utils/utils.h
gmum.r/inst/include/utils/tinythread.h
gmum.r/inst/include/utils/threading.h
gmum.r/inst/include/utils/logger.h
gmum.r/inst/include/utils/fast_mutex.h
gmum.r/src
gmum.r/src/Makevars
gmum.r/src/cec
gmum.r/src/cec/assignment.cpp
gmum.r/src/cec/cec.cpp
gmum.r/src/cec/cec_configuration.cpp
gmum.r/src/cec/cluster_custom_function.cpp
gmum.r/src/cec/hartigan.cpp
gmum.r/src/cec/centroids_assignment.cpp
gmum.r/src/cec/random_assignment.cpp
gmum.r/src/cec/cluster.cpp
gmum.r/src/cec/kmeanspp_assignment.cpp
gmum.r/src/cec/cec_module.cpp
gmum.r/src/svmlight
gmum.r/src/svmlight/svm_hideo.c
gmum.r/src/svmlight/svm_common.c
gmum.r/src/svmlight/svm_learn.c
gmum.r/src/svm
gmum.r/src/svm/svm_basic.cpp
gmum.r/src/svm/two_e_svm_post.cpp
gmum.r/src/svm/libsvm_runner.cpp
gmum.r/src/svm/svm_utils.cpp
gmum.r/src/svm/svmlight_runner.cpp
gmum.r/src/svm/validator_runner.cpp
gmum.r/src/svm/svm_client.cpp
gmum.r/src/svm/two_e_svm_pre.cpp
gmum.r/src/svm/svm.cpp
gmum.r/src/svm/svm_wrapper_module.cpp
gmum.r/src/gng
gmum.r/src/gng/gng_configuration.cpp
gmum.r/src/gng/gng_algorithm.cpp
gmum.r/src/gng/gng_module.cpp
gmum.r/src/gng/gng_server.cpp
gmum.r/src/Makevars.win
gmum.r/src/root.cpp
gmum.r/src/utils
gmum.r/src/utils/tinythread.cpp
gmum.r/src/utils/utils.cpp
gmum.r/src/utils/threading.cpp
gmum.r/NAMESPACE
gmum.r/demo
gmum.r/demo/svm-demo.R
gmum.r/demo/extra
gmum.r/demo/extra/mnist.R
gmum.r/demo/extra/tfml_demo.R
gmum.r/demo/cec.R
gmum.r/demo/00Index
gmum.r/data
gmum.r/data/cec.mouse1.spherical.RData
gmum.r/data/cec.ellipsegauss.RData
gmum.r/data/svm.transduction.RData
gmum.r/data/cec.tset.RData
gmum.r/data/svm_breast_cancer_dataset.RData
gmum.r/R
gmum.r/R/gmum.errors.R
gmum.r/R/gmum.R
gmum.r/R/gng.R
gmum.r/R/cec.summary.R
gmum.r/R/cec.R
gmum.r/R/cec.print.R
gmum.r/R/svm.utils.R
gmum.r/R/R_scripts
gmum.r/R/R_scripts/bigDataGenerator.R
gmum.r/R/R_scripts/comparative.tests.R
gmum.r/R/R_scripts/mouseUniformGenerator.R
gmum.r/R/R_scripts/wine_dataset.R
gmum.r/R/R_scripts/mouseUniformGeneratorNew.R
gmum.r/R/R_scripts/energy.R
gmum.r/R/R_scripts/comparative.tests.2e.R
gmum.r/R/R_scripts/mouseGaussGenerator.R
gmum.r/R/R_scripts/test_cec_energy_func.R
gmum.r/R/R_scripts/gaussGenerator.R
gmum.r/R/R_scripts/3DDataGenerator.R
gmum.r/R/cec.plot.R
gmum.r/R/svm.R
gmum.r/R/misc.R
gmum.r/R/gng.visualize.R
gmum.r/R/gng.presets.R
gmum.r/R/gng.utils.R
gmum.r/MD5
gmum.r/DESCRIPTION
gmum.r/man
gmum.r/man/runOneIteration.Rd
gmum.r/man/Rcpp_CecConfiguration-class.Rd
gmum.r/man/terminate-methods.Rd
gmum.r/man/print.svm.Rd
gmum.r/man/optimized-gng.Rd
gmum.r/man/logEnergy.Rd
gmum.r/man/iterations.Rd
gmum.r/man/energy.Rd
gmum.r/man/gng.plot.layout.v2d.Rd
gmum.r/man/summary.cec.Rd
gmum.r/man/cec.ellipsegauss.Rd
gmum.r/man/predictComponent-methods.Rd
gmum.r/man/findClosests.Rd
gmum.r/man/isRunning.Rd
gmum.r/man/svm.accuracy.Rd
gmum.r/man/numberNodes.Rd
gmum.r/man/errorStatistics.Rd
gmum.r/man/Tset.Rd
gmum.r/man/gngLoad.Rd
gmum.r/man/predict.cec.Rd
gmum.r/man/gng.preset.cube.Rd
gmum.r/man/print.cec.Rd
gmum.r/man/caret.gmumSvmRadial.Rd
gmum.r/man/run-methods.Rd
gmum.r/man/pause.Rd
gmum.r/man/runAll.Rd
gmum.r/man/getDataset.Rd
gmum.r/man/get.wine.dataset.X.Rd
gmum.r/man/get.wine.dataset.y.Rd
gmum.r/man/gng.preset.plane.Rd
gmum.r/man/covMatrix.Rd
gmum.r/man/svm.breastcancer.dataset.Rd
gmum.r/man/cec.ellipsegauss.extra.Rd
gmum.r/man/plot.svm.Rd
gmum.r/man/CEC.Rd
gmum.r/man/meanError.Rd
gmum.r/man/predict.gng.Rd
gmum.r/man/summary.svm.Rd
gmum.r/man/caret.gmumSvmPoly.Rd
gmum.r/man/centers.Rd
gmum.r/man/Rcpp_GNGServer-class.Rd
gmum.r/man/summary.gng.Rd
gmum.r/man/gng.Rd
gmum.r/man/node-methods.Rd
gmum.r/man/plot.gng.Rd
gmum.r/man/Rcpp_SVMClient-class.Rd
gmum.r/man/convertToIGraph.Rd
gmum.r/man/insertExamples.Rd
gmum.r/man/logClusters.Rd
gmum.r/man/clustering-methods.Rd
gmum.r/man/cec.mouse1.spherical.extra.Rd
gmum.r/man/calculateCentroids.Rd
gmum.r/man/svm.Rd
gmum.r/man/gngSave.Rd
gmum.r/man/cec.mouse1.spherical.Rd
gmum.r/man/gng.preset.sphere.Rd
gmum.r/man/predict.svm.Rd
gmum.r/man/svm.transduction.Rd
gmum.r/man/plot.cec.Rd
gmum.r/man/print.gng.Rd
gmum.r/man/MultiClassSVM-class.Rd
gmum.r/man/Rcpp_CecModel-class.Rd
gmum.r/man/caret.gmumSvmLinear.Rd
gmum.r/LICENSE