gprofiler2: Interface to the 'g:Profiler' Toolset

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Package details

AuthorLiis Kolberg <liis.kolberg@ut.ee>, Uku Raudvere <uku.raudvere@ut.ee>
MaintainerLiis Kolberg <liis.kolberg@ut.ee>
LicenseGPL (>= 2)
Version0.2.3
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("gprofiler2")

Try the gprofiler2 package in your browser

Any scripts or data that you put into this service are public.

gprofiler2 documentation built on May 29, 2024, 8:31 a.m.