Nothing
knitr::opts_chunk$set(echo = FALSE) library(rmarkdown) library(agricolae) library(dplyr) library(ggplot2) library(magrittr) library(desplot) library(knitr)
Details of the Experiment is given below.
if(input$design == 'crd'){ if(input$rep_crd>0 && input$submit1>0){ Treatments= input$trt_crd Replication=input$rep_crd Experimental.units=Treatments*Replication det=cbind(Treatments,Replication,Experimental.units) det=as.data.frame(det) kable(det,row.names = FALSE) %>% kable_styling() %>% kable_paper("hover", full_width = F) } } if(input$design == 'rbd'){ if(input$rep_rbd>0 && input$submit2>0){ Treatments= input$trt_rbd Blocks=input$rep_rbd Experimental.units=Treatments*Blocks det=cbind(Treatments,Blocks,Experimental.units) det=as.data.frame(det) kable(det,row.names = FALSE) %>% kable_styling() %>% kable_paper("hover", full_width = F) } } if(input$design == 'aug'){ if(input$check_aug>0&&input$trt_aug&&input$rep_aug>0 && input$submit3>0){ Check =input$check_aug Treatments= input$trt_aug Blocks=input$rep_aug Plots =Check*Blocks+Treatments det=cbind(Check,Treatments,Blocks,Plots) det=as.data.frame(det) kable(det,row.names = FALSE) %>% kable_styling() %>% kable_paper("hover", full_width = F) } } if(input$design == 'split'){ if(input$maintrt_split>0&&input$subtrt_split&&input$rep_split>0 && input$submit4>0){ Main_plot_trt =input$maintrt_split Sub_plot_trt =input$subtrt_split Replications =input$rep_split No_of_Plots =Main_plot_trt*Sub_plot_trt*Replications det=cbind(Main_plot_trt,Sub_plot_trt,Replications,No_of_Plots) det=as.data.frame(det) kable(det,row.names = FALSE) %>% kable_styling() %>% kable_paper("hover", full_width = F) } } if(input$design == 'strip'){ if(input$maintrt_strip>0&&input$subtrt_strip&&input$rep_strip>0 && input$submit5>0){ Main_plot_A =input$maintrt_strip Main_plot_B =input$subtrt_strip Replications =input$rep_strip No_of_Plots =Main_plot_A*Main_plot_B*Replications det=cbind(Main_plot_A,Main_plot_B,Replications,No_of_Plots) det=as.data.frame(det) kable(det,row.names = FALSE) %>% kable_styling() %>% kable_paper("hover", full_width = F) } }
Field layout of your experiment
if (input$design == "crd") { if (input$trt_crd > 0) { if (input$rep_crd > 0) { if (input$submit1 > 0) { t = input$trt_crd r = input$rep_crd s = input$size rand = input$rand trtname = sprintf("T%d", 1:t) outdesign = agricolae::design.crd(trtname, r = r, seed = rand, serie = 0, kinds = "Super-Duper", randomization = TRUE) CRD = outdesign$book CRD = CRD[order(CRD$r), ] CRD$col = CRD$r CRD$row = rep(1:t, r) desplot::desplot( form = trtname ~ col + row, data = CRD, text = trtname, out1 = col, out2 = row, out2.gpar = list(col = "black", lwd = 3), cex = s, main = "Layout of Completely Randomized Design", show.key = FALSE ) } } } } if (input$design == "rbd") { if (input$trt_rbd > 0) { if (input$rep_rbd > 0) { if (input$submit2 > 0) { t = input$trt_rbd rep = input$rep_rbd s = input$size_rbd trtname = sprintf("T%d", 1:t) n = t * rep outdesign = agricolae::design.rcbd(trt = trtname, r = rep, seed = input$rand2, serie = 0, kinds = "Super-Duper", randomization = TRUE) RBD = outdesign$book RBD = RBD[order(RBD$block), ] RBD$blocks = as.numeric(RBD$block) RBD$plots = rep(1:t, rep) desplot::desplot( form = block ~ blocks + plots, data = RBD, text = trtname, out1 = blocks, out2 = plots, out2.gpar = list(col = "green"), cex = s, main = "Layout of Randomized Block Design", show.key = TRUE ) } } } } if(input$design == 'aug'){ if(input$check_aug> 0){ if(input$trt_aug> 0){ if(input$rep_aug> 0){ if(input$submit3>0){ NC=input$check_aug # no. of check blk=input$rep_aug # no: of Blocks trt=input$trt_aug # no.of trt s=input$size_aug T1=sprintf("C%d", 1:NC) # checks T2=sprintf("T%d", 1:trt) # treatments outdesign=agricolae::design.dau(T1,T2, r=blk,seed=input$rand3,serie=0,randomization = TRUE) aug= outdesign$book aug = aug[order(aug$block),] aug$blocks = as.numeric(aug$block) x=aug %>% group_by(block) %>% mutate(row = row_number()) aug1=as.data.frame(cbind(aug,row=x$row)) desplot::desplot(form=block~ blocks+row, data=aug1, text=trt, out1=blocks, out2=row, cex=s, main="Layout of Augmented Randomized Block Design",show.key=FALSE) } } } } } if(input$design == 'strip'){ if(input$maintrt_strip> 0){ if(input$subtrt_strip> 0){ if(input$rep_strip> 0){ if(input$submit5>0){ a=input$maintrt_strip b=input$subtrt_strip rep=input$rep_strip s=input$size_strip main1=sprintf("A%d", 1:a) main2=sprintf("B%d", 1:b) outdesign =agricolae::design.strip(main1,main2,r=rep,serie=0,seed=input$rand5,kinds="Super-Duper",randomization=TRUE) strip= outdesign$book strip$block2=strip$block v1 = do.call(paste, as.data.frame(t(apply(strip[4:5], 1, sort)))) strip$row = match(v1, unique(v1)) v2 = do.call(paste, as.data.frame(t(apply(strip[2:3], 1, sort)))) strip$column = match(v2, unique(v2)) desplot::desplot(form=main1~ row+column, data=strip,text=main2, out1=column, out2=row,out2.gpar = list(col = "#a83232"), cex=s, main="Layout of Strip-Plot Design",show.key=TRUE) } } } } } if(input$design == 'split'){ if(input$maintrt_split> 0){ if(input$subtrt_split> 0){ if(input$rep_split> 0){ if(input$submit4>0){ a=input$maintrt_split b=input$subtrt_split rep=input$rep_split s=input$size_split main=sprintf("A%d", 1:a) sub=sprintf("b%d", 1:b) outdesign =agricolae::design.split(main,sub,r=rep,serie=0,seed=input$rand4,kinds="Super-Duper",randomization=TRUE) split = outdesign$book split = split[order(split$plots),] split$plots = split$plots split$plots=as.numeric(split$plots) split$splots=as.numeric(split$splots) desplot::desplot(form=main~ plots+splots, data=split,col=main, text=sub, out1=plots, out2=splots, cex=s, main="Layout of Split-Plot Design",show.key=TRUE) } } } } }
if (input$design == "crd") { if (input$table_butt1 > 0) { t = input$trt_crd r = input$rep_crd n = t * r trtname = sprintf("T%d", 1:t) outdesign = agricolae::design.crd(trtname, r = r, seed = input$rand, serie = 0, kinds = "Super-Duper", randomization = TRUE) CRD = outdesign$book CRD = CRD[order(CRD$r), ] CRD$exp = rep(1:n) final = as.data.frame(cbind(Experimental.Unit = CRD$exp, Treatments = as.character(CRD$trtname))) kable(final, caption = "Layout of CRD", row.names = FALSE) } } if (input$design == "rbd") { if (input$table_butt2 > 0) { t = input$trt_rbd rep = input$rep_rbd trtname = sprintf("T%d", 1:t) n = t * rep outdesign = agricolae::design.rcbd(trt = trtname, r = rep, seed = input$rand2, serie = 0, kinds = "Super-Duper", randomization = TRUE) RBD = outdesign$book RBD = RBD[order(RBD$block), ] RBD$plot = rep(1:t, rep) final = as.data.frame(cbind(Block = RBD$block, Plot = RBD$plot, Treatment = as.character(RBD$trtname))) kable(final, caption = "Layout of RBD", row.names = FALSE) } } if (input$design == "aug") { if (input$table_butt3 > 0) { NC = input$check_aug # no. of check blk = input$rep_aug # no: of Blocks trt = input$trt_aug # no.of trt s = input$size_aug T1 = sprintf("C%d", 1:NC) # checks T2 = sprintf("T%d", 1:trt) # treatments outdesign = agricolae::design.dau(T1, T2, r = blk, seed = input$rand3, serie = 0, randomization = TRUE) aug = outdesign$book aug = aug[order(aug$block), ] x1 = aug %>% group_by(block) %>% mutate(Plot = row_number()) final = as.data.frame(cbind(Block = x1$block, Plot = x1$Plot, Treatment = as.character(x1$trt))) kable(final, caption = "Layout of Augmented Design", row.names = FALSE) } } if (input$design == "split") { if (input$table_butt4 > 0) { a = input$maintrt_split b = input$subtrt_split rep = input$rep_split s = input$size_split main = sprintf("A%d", 1:a) sub = sprintf("b%d", 1:b) outdesign = agricolae::design.split(main, sub, r = rep, serie = 0, seed = input$rand4, kinds = "Super-Duper", randomization = TRUE) split = outdesign$book split = split[order(split$plots), ] final = as.data.frame(cbind( Main_plot = split$plots, Sub_plot = split$splots, Replication = split$block, Main_treatment = as.character(split$main), Sub_treatment = as.character(split$sub) )) kable(final, caption = "Layout of Split-Plot design", row.names = FALSE) } } if (input$design == "strip") { if (input$table_butt5 > 0) { a = input$maintrt_strip b = input$subtrt_strip rep = input$rep_strip s = input$size_strip main1 = sprintf("A%d", 1:a) main2 = sprintf("B%d", 1:b) outdesign = agricolae::design.strip(main1, main2, r = rep, serie = 0, seed = input$rand5, kinds = "Super-Duper", randomization = TRUE) strip = outdesign$book strip$block2 = strip$block v1 = do.call(paste, as.data.frame(t(apply(strip[4:5], 1, sort)))) strip$row = match(v1, unique(v1)) v2 = do.call(paste, as.data.frame(t(apply(strip[2:3], 1, sort)))) strip$column = match(v2, unique(v2)) final = as.data.frame(cbind( Replication = strip$block, Horizontal_row_No. = strip$row, Treatment_A = as.character(strip$main1), Vertical_row_No. = strip$column, Treatment_B = as.character(strip$main2) )) kable(final, caption = "Layout of Strip plot design", row.names = FALSE) } }
Package: grapesAgri1, Version;1.0.0
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