Man pages for graphicalExtremes
Statistical Methodology for Graphical Extreme Value Models
| censor | Censor dataset |
| checkGamma | HR parameter matrix checks |
| check_graph | Check input graph |
| check_partial_matrix_and_graph | Check input graph and partial matrix |
| check_split_by_sep | Identify pairs of vertices that are split by a separator |
| chi2Gamma | Transformation between \eChi and \eGamma |
| complete_Gamma | Completion of Gamma matrices |
| complete_Gamma_decomposable | Completion of decomposable Gamma matrices |
| complete_Gamma_general | Non-decomposable completion of variogram matrices |
| complete_Gamma_general_demo | DEMO-VERSION: Completion of non-decomposable Gamma matrices |
| complete_Gamma_general_split | Non-decomposable completion of variogram matrices |
| complete_Gamma_one_step | Completion of two-clique decomposable Gamma matrices |
| computeLimits | Compute plot limits |
| danube | Upper Danube basin dataset |
| data2mpareto | Data standardization to multivariate Pareto scale |
| eglatent | Learning extremal graph structure with latent variables |
| eglearn | Learning extremal graph structure |
| emp_chi | Empirical estimation of extremal correlation matrix \eChi |
| emp_chi_multdim | Empirical estimation of extremal correlation \eChi |
| emp_vario | Estimation of the variogram matrix \eGamma of a Huesler-Reiss... |
| emst | Fitting extremal minimum spanning tree |
| emtp2 | Performs Gaussian likelihood optimization under Laplacian... |
| ensure_matrix_symmetry_and_truncate_zeros | Ensure numerical matrix symmetry/zero values |
| fast_diag | Fast computation of diag(y %_% M %_% t(y)) |
| fillFixedParams | Helper function to combine par with fixed params (in init) |
| findVsep | Find a separator set for two vertices |
| fit_graph_to_Theta | Experimental: Fit graph using empirical Theta matrix |
| fitInInterval | Fit value(s) in interval |
| flightCountMatrixToConnectionList | Convert flight counts to connection list |
| flights | Flights delay data |
| fmpareto_graph_HR | Parameter fitting for Huesler-Reiss graphical models |
| fmpareto_HR_helpers | HR Parameter fitting - Helper functions |
| fmpareto_HR_MLE | Parameter fitting for multivariate Huesler-Reiss Pareto... |
| Gamma2chi_3D | Compute theoretical \eChi in 3D |
| generate_random_Gamma | Generate a random Gamma matrix |
| generateRandomGraph | Generate random graphs |
| generate_random_graphical_Gamma | Generate a random Gamma matrix for a given graph |
| generate_random_integer_Gamma | Generate a random Gamma matrix containing only integers |
| generate_random_model | Generate random Huesler-Reiss Models |
| generate_random_spd_matrix | Generate a random symmetric positive definite matrix |
| get_alert_function | Get alert function |
| get_cliques_and_separators | Get Cliques and Separators of a graph |
| get_cliques_and_separators_OLD | Get Cliques and Separators of a graph |
| getDanubeFlowGraph | Get Danube flow graph |
| getFlightDelayData | Get filtered flight delays |
| getFlightGraph | Get flight graph |
| get_mc_cores | Number of cores to be used in parallel computations |
| getPackageData | Get package data |
| getSubMatrixForSubgraph | Get the submatrix corresponding to a subgraph |
| get_tol | Tolerances to be used in computations |
| graphicalExtremes | graphicalExtremes: Statistical methodology for graphical... |
| graphs_equal | Graph equality |
| logdV_HR | Compute the exponent measure density of HR distribution |
| logdVK_HR | Compute censored exponent measure |
| logLH_HR | Full censored log-likelihood of HR model |
| loglik_HR | Compute Huesler-Reiss log-likelihood, AIC, and BIC |
| make_numeric_indices | Convert indices to numerical indices |
| make_sep_list | Create a list of separators |
| matrix2graph | Convert matrix to graph |
| mparetomargins | Marginalize multivariate Pareto dataset |
| order_cliques | Order Cliques |
| par2Matrix | Create Gamma or Theta from vector |
| parameterMatrixConversion | Conversion between Huesler-Reiss parameter matrices |
| parToMatricesFactory | Factory: parToMatrices |
| plotDanube | Plot Danube River Flow Data |
| plotFlights | Plot flight data |
| rmpareto | Sampling of a multivariate Pareto distribution |
| rmpareto_tree | Sampling of a multivariate Pareto distribution on a tree |
| rmstable | Sampling of a multivariate max-stable distribution |
| rmstable_tree | Sampling of a multivariate max-stable distribution on a tree |
| simu_px_dirichlet | Simulate Dirichlet extremal functions |
| simu_px_HR | Simulate HR extremal functions |
| simu_px_logistic | Simulate logistic extremal functions |
| simu_px_neglogistic | Simulate negative logistic extremal functions |
| simu_px_tree_dirichlet | Simulate Dirichlet extremal functions on a tree |
| simu_px_tree_HR | Simulate HR extremal functions on a tree |
| simu_px_tree_logistic | Simulate logistic extremal functions on a tree |
| split_graph | Split graph into invariant subgraphs |
| unif | Uniform margin |
| V_HR | Compute exponent measure |
| Zmatrix | Computes the Z-matrix |
