Fit the regularization path of linear, logistic or Cox models with overlapping grouped covariates based on the latent group lasso approach. Latent group MCP/SCAD as well as bi-level selection methods, namely the group exponential lasso and the composite MCP are also available. This package serves as an extension of R package 'grpreg' (by Dr. Patrick Breheny <patrick-breheny@uiowa.edu>) for grouped variable selection involving overlaps between groups.

Author | Yaohui Zeng, Patrick Breheny |

Date of publication | 2016-12-31 08:47:57 |

Maintainer | Yaohui Zeng <yaohui-zeng@uiowa.edu> |

License | GPL-3 |

Version | 2.2-0 |

https://github.com/YaohuiZeng/grpregOverlap |

**cv.grpregOverlap:** Cross-validation for choosing regularization parameter lambda

**cv.grpsurvOverlap:** Cross-validation for choosing regularization parameter lambda...

**expandX:** Expand design matrix according to grouping information

**grpregOverlap:** Fit penalized regression models with overlapping grouped...

**grpregOverlap-internal:** Internal functions

**grpregOverlap-package:** Penalized regression models with overlapping grouped...

**incidenceMatrix:** Compute the incidence matrix indicating group memebership

**overlapMatrix:** Compute a matrix indicating overlaps between groups

**pathway.dat:** Gene expression and pathway information of p53 cancer cell...

**plot.cv.grpregOverlap:** Plots the cross-validation curve from cross-validated object

**plot.grpregOverlap:** Plot object "grpregOverlap"

**predict.grpregOverlap:** Model predictions based on a fitted object

**predict.grpsurvOverlap:** Model predictions based on a fitted 'grpsurvOverlap' object.

**select.grpregOverlap:** Select an value of lambda along a regularization path

**summary.cv.grpregOverlap:** Summarizing inferences based on cross-validation

grpregOverlap

grpregOverlap/inst

grpregOverlap/inst/CITATION

grpregOverlap/NAMESPACE

grpregOverlap/NEWS

grpregOverlap/data

grpregOverlap/data/pathway.dat.RData

grpregOverlap/R

grpregOverlap/R/select.R
grpregOverlap/R/cv.grpsurvOverlap.R
grpregOverlap/R/summary.cv.grpregOverlap.R
grpregOverlap/R/plot.cv.grpregOverlap.R
grpregOverlap/R/predict.cv.R
grpregOverlap/R/plot.R
grpregOverlap/R/predict.R
grpregOverlap/R/cv.grpregOverlap.R
grpregOverlap/R/predict.grpsurvOverlap.R
grpregOverlap/R/overlapMatrix.R
grpregOverlap/R/grpregOverlap.R
grpregOverlap/README.md

grpregOverlap/MD5

grpregOverlap/DESCRIPTION

grpregOverlap/man

grpregOverlap/man/grpregOverlap-internal.Rd
grpregOverlap/man/grpregOverlap-package.Rd
grpregOverlap/man/incidenceMatrix.Rd
grpregOverlap/man/grpregOverlap.Rd
grpregOverlap/man/expandX.Rd
grpregOverlap/man/plot.grpregOverlap.Rd
grpregOverlap/man/plot.cv.grpregOverlap.Rd
grpregOverlap/man/predict.grpsurvOverlap.Rd
grpregOverlap/man/select.grpregOverlap.Rd
grpregOverlap/man/cv.grpregOverlap.Rd
grpregOverlap/man/predict.grpregOverlap.Rd
grpregOverlap/man/cv.grpsurvOverlap.Rd
grpregOverlap/man/overlapMatrix.Rd
grpregOverlap/man/pathway.dat.Rd
grpregOverlap/man/summary.cv.grpregOverlap.Rd
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