Fit the regularization path of linear, logistic or Cox models with
overlapping grouped covariates based on the latent group lasso approach. Latent
group MCP/SCAD as well as bilevel selection methods, namely the group exponential
lasso and the composite MCP are also available. This package serves as an
extension of R package 'grpreg' (by Dr. Patrick Breheny
Author  Yaohui Zeng, Patrick Breheny 
Date of publication  20161231 08:47:57 
Maintainer  Yaohui Zeng <yaohuizeng@uiowa.edu> 
License  GPL3 
Version  2.20 
URL  https://github.com/YaohuiZeng/grpregOverlap 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:



All man pages Function index File listing
Man pages  

cv.grpregOverlap: Crossvalidation for choosing regularization parameter lambda  
cv.grpsurvOverlap: Crossvalidation for choosing regularization parameter lambda...  
expandX: Expand design matrix according to grouping information  
grpregOverlap: Fit penalized regression models with overlapping grouped...  
grpregOverlapinternal: Internal functions  
grpregOverlappackage: Penalized regression models with overlapping grouped...  
incidenceMatrix: Compute the incidence matrix indicating group memebership  
overlapMatrix: Compute a matrix indicating overlaps between groups  
pathway.dat: Gene expression and pathway information of p53 cancer cell...  
plot.cv.grpregOverlap: Plots the crossvalidation curve from crossvalidated object  
plot.grpregOverlap: Plot object "grpregOverlap"  
predict.grpregOverlap: Model predictions based on a fitted object  
predict.grpsurvOverlap: Model predictions based on a fitted 'grpsurvOverlap' object.  
select.grpregOverlap: Select an value of lambda along a regularization path  
summary.cv.grpregOverlap: Summarizing inferences based on crossvalidation 
Functions  

coef.cv.grpregOverlap  Man page Source code 
coef.grpregOverlap  Man page Source code 
cv.grpregOverlap  Man page Source code 
cv.grpsurvOverlap  Man page Source code 
expandX  Man page Source code 
gamma2beta  Man page Source code 
grpregOverlap  Man page Source code 
grpregOverlappackage  Man page 
incidenceMatrix  Man page Source code 
overlapMatrix  Man page Source code 
pathway.dat  Man page 
plot.cv.grpregOverlap  Man page Source code 
plot.grpregOverlap  Man page Source code 
predict.cv.grpregOverlap  Man page Source code 
predict.grpregOverlap  Man page Source code 
predict.grpsurvOverlap  Man page Source code 
print.summary.cv.grpregOverlap  Man page Source code 
select  Man page 
select.grpregOverlap  Man page Source code 
summary.cv.grpregOverlap  Man page Source code 
Files  

inst
 
inst/CITATION
 
NAMESPACE
 
NEWS
 
data
 
data/pathway.dat.RData
 
R
 
R/select.R  
R/cv.grpsurvOverlap.R  
R/summary.cv.grpregOverlap.R  
R/plot.cv.grpregOverlap.R  
R/predict.cv.R  
R/plot.R  
R/predict.R  
R/cv.grpregOverlap.R  
R/predict.grpsurvOverlap.R  
R/overlapMatrix.R  
R/grpregOverlap.R  
README.md  
MD5
 
DESCRIPTION
 
man
 
man/grpregOverlapinternal.Rd  
man/grpregOverlappackage.Rd  
man/incidenceMatrix.Rd  
man/grpregOverlap.Rd  
man/expandX.Rd  
man/plot.grpregOverlap.Rd  
man/plot.cv.grpregOverlap.Rd  
man/predict.grpsurvOverlap.Rd  
man/select.grpregOverlap.Rd  
man/cv.grpregOverlap.Rd  
man/predict.grpregOverlap.Rd  
man/cv.grpsurvOverlap.Rd  
man/overlapMatrix.Rd  
man/pathway.dat.Rd  
man/summary.cv.grpregOverlap.Rd 
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