grpregOverlap: Penalized Regression Models with Overlapping Grouped Covariates
Version 2.2-0

Fit the regularization path of linear, logistic or Cox models with overlapping grouped covariates based on the latent group lasso approach. Latent group MCP/SCAD as well as bi-level selection methods, namely the group exponential lasso and the composite MCP are also available. This package serves as an extension of R package 'grpreg' (by Dr. Patrick Breheny ) for grouped variable selection involving overlaps between groups.

AuthorYaohui Zeng, Patrick Breheny
Date of publication2016-12-31 08:47:57
MaintainerYaohui Zeng <yaohui-zeng@uiowa.edu>
LicenseGPL-3
Version2.2-0
URL https://github.com/YaohuiZeng/grpregOverlap
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("grpregOverlap")

Getting started

Package overview
README.md

Popular man pages

cv.grpsurvOverlap: Cross-validation for choosing regularization parameter lambda...
grpregOverlap-internal: Internal functions
grpregOverlap-package: Penalized regression models with overlapping grouped...
pathway.dat: Gene expression and pathway information of p53 cancer cell...
plot.grpregOverlap: Plot object "grpregOverlap"
predict.grpregOverlap: Model predictions based on a fitted object
select.grpregOverlap: Select an value of lambda along a regularization path
See all...

All man pages Function index File listing

Man pages

cv.grpregOverlap: Cross-validation for choosing regularization parameter lambda
cv.grpsurvOverlap: Cross-validation for choosing regularization parameter lambda...
expandX: Expand design matrix according to grouping information
grpregOverlap: Fit penalized regression models with overlapping grouped...
grpregOverlap-internal: Internal functions
grpregOverlap-package: Penalized regression models with overlapping grouped...
incidenceMatrix: Compute the incidence matrix indicating group memebership
overlapMatrix: Compute a matrix indicating overlaps between groups
pathway.dat: Gene expression and pathway information of p53 cancer cell...
plot.cv.grpregOverlap: Plots the cross-validation curve from cross-validated object
plot.grpregOverlap: Plot object "grpregOverlap"
predict.grpregOverlap: Model predictions based on a fitted object
predict.grpsurvOverlap: Model predictions based on a fitted 'grpsurvOverlap' object.
select.grpregOverlap: Select an value of lambda along a regularization path
summary.cv.grpregOverlap: Summarizing inferences based on cross-validation

Functions

coef.cv.grpregOverlap Man page Source code
coef.grpregOverlap Man page Source code
cv.grpregOverlap Man page Source code
cv.grpsurvOverlap Man page Source code
expandX Man page Source code
gamma2beta Man page Source code
grpregOverlap Man page Source code
grpregOverlap-package Man page
incidenceMatrix Man page Source code
overlapMatrix Man page Source code
pathway.dat Man page
plot.cv.grpregOverlap Man page Source code
plot.grpregOverlap Man page Source code
predict.cv.grpregOverlap Man page Source code
predict.grpregOverlap Man page Source code
predict.grpsurvOverlap Man page Source code
print.summary.cv.grpregOverlap Man page Source code
select Man page
select.grpregOverlap Man page Source code
summary.cv.grpregOverlap Man page Source code

Files

inst
inst/CITATION
NAMESPACE
NEWS
data
data/pathway.dat.RData
R
R/select.R
R/cv.grpsurvOverlap.R
R/summary.cv.grpregOverlap.R
R/plot.cv.grpregOverlap.R
R/predict.cv.R
R/plot.R
R/predict.R
R/cv.grpregOverlap.R
R/predict.grpsurvOverlap.R
R/overlapMatrix.R
R/grpregOverlap.R
README.md
MD5
DESCRIPTION
man
man/grpregOverlap-internal.Rd
man/grpregOverlap-package.Rd
man/incidenceMatrix.Rd
man/grpregOverlap.Rd
man/expandX.Rd
man/plot.grpregOverlap.Rd
man/plot.cv.grpregOverlap.Rd
man/predict.grpsurvOverlap.Rd
man/select.grpregOverlap.Rd
man/cv.grpregOverlap.Rd
man/predict.grpregOverlap.Rd
man/cv.grpsurvOverlap.Rd
man/overlapMatrix.Rd
man/pathway.dat.Rd
man/summary.cv.grpregOverlap.Rd
grpregOverlap documentation built on May 19, 2017, 3:43 p.m.

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