Man pages for gsClusterDetect
Utilities for Geo-Spatial Cluster Detection and Significance Classification
| add_location_counts | Add location counts to cluster location list |
| add_spline_threshold | Use spline lookup to restrict 'ObservedExpectedGrid' to... |
| check_vars | check for variables in frame |
| compress_clusters | Compress a cluster_alert_table |
| compress_clusters_fast | Fast version of compress clusters |
| counties | County Location Dataset |
| county_distance_matrix | Get distance matrix for counties within a state |
| create_custom_dist_list | Create a sparse distance list from custom location data |
| create_dist_list | Generalized distance list as sparse list |
| custom_distance_matrix | Build a Distance Matrix from a Custom Data Frame |
| dot-assert_tigris_available | Helper function simply asserts if tigris is installed. It is... |
| dot-clean_up_alert_table | Clean and finalize cluster alert table: |
| dot-distance_meters_from_coords | Helper function gets the distance in meter between pairs of... |
| dot-distance_result_from_coords | Helper function takes a vector of locations, and a set of... |
| dot-meters_per_unit | Function returns the number of meters in unit (one of miles,... |
| dot-numeric_location_coords | Helper function reduces a data frame to only those rows where... |
| dot-resolve_coord_var_names | Helper function resolves coordinate variable names |
| dot-sparse_dist_list_from_locs | This is a helper function to create a named list of all the... |
| dot-validate_custom_locations | Helper function: given a data frame, and strings for... |
| example_count_data | Example Count Dataset |
| find_clusters | Find clusters |
| generate_case_grids | Get test period and baseline period case counts |
| generate_ggplot_time_series | Generate ggplot of timeseries |
| generate_heatmap | Generate heatmap of data |
| generate_heatmap_data | Get heat map data from a set of location, date, count data |
| generate_observed_expected | Generate the observed and expected information |
| generate_plotly_time_series | Generate plotly timeseries |
| generate_summary_table | Summary count-by-location-and-date data, given baseline and... |
| generate_time_series_data | Generate time series data |
| generate_time_series_plot | Generate timeseries plot data |
| gen_nearby_case_info | Return baseline and test period case grids restricting by... |
| get_baseline_dates | Generate baseline dates vector |
| get_nearby_locations | Get nearby locations |
| get_point_data | Compute representative data points for sf polygons |
| get_test_dates | Generate test dates vector |
| ggplot_heatmap | Generate ggplot heatmap |
| gsClusterDetect-package | gsClusterDetect: Utilities for Geo-Spatial Cluster Detection... |
| map_clusters | Map Clusters |
| map_clusters_ggplot | Render Cluster Map with ggplot2 |
| map_clusters_plotly | Render Cluster Map with plotly |
| plotly_heatmap | Generate plotly heatmap |
| prepare_map_data | Prepare cluster result and shape file for mapping |
| reduce_clusters_to_min | Filter clusters on minimum overall count |
| sf_to_plotly_polygons | Convert sf to plotly polygons |
| spline_001 | Spline Lookup Table - 0.001 |
| spline_005 | Spline Lookup Table - 0.005 |
| spline_01 | Spline Lookup Table - 0.01 |
| spline_05 | Spline Lookup Table - 0.05 |
| state_distance_matrix | Get distance matrix for states in the US |
| states | State Location Dataset |
| st_injects | Add data counts for parameterized injected clusters |
| tract_distance_matrix | Build a Tract Distance Matrix for a State |
| tract_generator | Generate Census Tract Centroids for a State |
| us_distance_matrix | Get distance matrix for all counties in the US |
| validate_clusters | Validates cluster object |
| validate_sf_file | Validates sf file |
| zipcodes | Zipcode Location Dataset |
| zip_distance_matrix | Get distance matrix for zip codes within a state |
