plot_raw_snp: Plot raw SNP
In gsrc: Genome Structure Rearrangement Calling in Genomes with High Synteny

Plots raw data for specified SNP.

1 2	plot_raw_snp(raw, n = 1L, transf = "log", pn = 2, theta = "atan2", nan = 0.5)

`raw`	Raw data object.
`n`	Integer, which SNP should be plotted.
`transf`	Method for transformation of the raw values. "none", "log" and "fourth-root" are implemented.
`pn`	Numeric, p-norm for the intensity calculation.
`theta`	Method for calculation of theta. Currently only "atan2" is implemented.
`nan`	Numveric to replace NaN for ballele computation (division by zero).

if(require(brassicaData)){
data("raw_napus", package = "brassicaData", envir = environment())
plot_raw_snp(raw_napus)
}

gsrc documentation built on May 30, 2017, 4:16 a.m.

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