h5: Interface to the 'HDF5' Library
Version 0.9.8

S4 Interface to the 'HDF5' library supporting fast storage and retrieval of R-objects like vectors, matrices and arrays to binary files in a language independent format. The 'HDF5' format can therefore be used as an alternative to R's save/load mechanism. Since h5 is able to access only subsets of stored data it can also handle data sets which do not fit into memory.

Browse man pages Browse package API and functions Browse package files

AuthorMario Annau [aut, cre]
Date of publication2016-07-16 21:00:05
MaintainerMario Annau <mario.annau@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version0.9.8
URL http://h5.predictingdaemon.com https://github.com/mannau/h5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("h5")

Man pages

Attribute: The Attribute Class
CommonFG: The CommonFG Class
CommonFG-DataSet: Functions to Create/Open DataSets in 'CommonFG' objects...
CommonFG-Group: Functions to Create/Open Groups in 'CommonFG' objects
DataSet: The DataSet Class
DataSet-Extend: Functions to Extend a DataSet
DataSet-Subset: Operators to Subset DataSet Objects
DataSpace: The DataSpace Class
H5File: HDF5 File Objects
H5Group: The H5Group Class
H5Location-Attribute: Read and Create Attributes for H5Location Objects
h5-package: H5 - Interface to the HDF5 API

Functions

Attribute Man page
Attribute-class Man page
ChunkSize Source code
CloseAttribute Source code
CloseDataset Source code
CloseDataspace Source code
CloseFile Source code
CloseGroup Source code
CommonFG Man page
CommonFG-DataSet Man page
CommonFG-Group Man page
CommonFG-class Man page
CreateAttribute_DataSet Source code
CreateAttribute_Group Source code
CreateAttribute_H5File Source code
CreateDataset Source code
CreateGroup Source code
DataSet Man page
DataSet-Extend Man page
DataSet-Subset Man page
DataSet-class Man page
DataSpace Man page
DataSpace-class Man page
ExistsGroup Source code
ExtendDataset Source code
FlushFile Source code
GetAttributeDimensions Source code
GetAttributeNames_CommonFG Source code
GetAttributeNames_DataSet Source code
GetAttributeType Source code
GetDataSetChunksize Source code
GetDataSetCompression Source code
GetDataSetDimensions Source code
GetDataSetMaxDimensions Source code
GetDataSetNames Source code
GetDataSetType Source code
GetDataSpace Source code
GetDataspace Source code
GetDimensions Source code
GetGroupNames Source code
GetSoftLinks Source code
GetTypechar Source code
H5File Man page Source code
H5File-class Man page
H5Group Man page
H5Group-class Man page
H5Location Man page
H5Location-Attribute Man page
H5Location-class Man page
IsHDF5File Source code
OpenAttribute_DataSet Source code
OpenAttribute_Group Source code
OpenAttribute_H5File Source code
OpenDataset Source code
OpenFile Source code
OpenGroup Source code
ReadAttribute Source code
ReadDataset Source code
SelectAll Source code
SelectElem Source code
SelectHyperslab Source code
Unlink Source code
WriteAttribute Source code
WriteDataset Source code
[,CommonFG,character,ANY-method Man page
[,DataSet,ANY,ANY-method Man page
[,DataSet,missing,missing-method Man page
[,DataSet,missing,numeric-method Man page
[,DataSet,numeric,missing-method Man page
[<-,CommonFG,character,ANY-method Man page
[<-,DataSet,ANY,ANY-method Man page
[<-,DataSet,missing,missing-method Man page
[<-,DataSet,missing,numeric-method Man page
[<-,DataSet,numeric,missing-method Man page
c,DataSet-method Man page
checkChunksize Source code
checkCompression Source code
checkMaxDimensions Source code
createAttribute Man page
createAttribute,H5Location,character-method Man page
createDataSet Man page
createDataSet,CommonFG,character,ANY,missing,missing,ANY,ANY,ANY Man page Man page
createDataSet,CommonFG,character,missing,character,ANY,ANY,ANY,A Man page
createDataset_internal Source code
createGroup Man page
createGroup,CommonFG,character-method Man page
dataSpaceFromIndex Source code
existsDataSet Man page
existsDataSet,CommonFG,character-method Man page
existsGroup Man page
existsGroup,CommonFG,character-method Man page
extendDataSet Man page
extendDataSet,DataSet,numeric-method Man page
getGroupLocation Source code
getH5Group Man page
getH5Group,CommonFG,character-method Man page
h5-package Man page
h5attr Man page
h5attr,H5Location,character-method Man page
h5attr<- Man page
h5attr<-,H5Location,character-method Man page
h5close Man page
h5close,DataSet-method Man page
h5close,DataSpace-method Man page
h5close,H5File-method Man page
h5close,H5Group-method Man page
h5file Man page Source code
h5flush Man page
h5flush,H5File-method Man page
h5unlink Man page
h5unlink,CommonFG,character-method Man page
is.h5file Man page Source code
list.attributes Man page
list.attributes,H5Location-method Man page
list.datasets Man page
list.datasets,CommonFG-method Man page
list.groups Man page
list.groups,CommonFG-method Man page
openAttribute Man page
openAttribute,H5Location,character-method Man page
openDataSet Man page
openDataSet,CommonFG,character-method Man page
openGroup Man page
openGroup,CommonFG,character-method Man page
readAttribute Man page
readAttribute,Attribute-method Man page
readDataSet Man page
readDataSet,DataSet-method Man page
selectDataSpace Man page
selectDataSpace,DataSet,ANY,ANY,missing-method Man page
selectDataSpace,DataSet,missing,missing,matrix-method Man page
selectDataSpace,DataSet,missing,missing,missing-method Man page
subsetDataSet Source code
transpose_data Source code
writeAttribute Man page
writeAttribute,Attribute-method Man page
writeDataSet Man page
writeDataSet,DataSet-method Man page
writeSubsetDataSet Source code

Files

inst
inst/benchmark
inst/benchmark/benchmark-BigSet.R
inst/test-ascii-length-bug.py
inst/NEWS.Rd
inst/test-f32.h5
inst/h5ex_t_enum.h5
inst/COPYRIGHTS
inst/test-f32.py
inst/test-h5link.h5
inst/test-h5link.py
inst/doc
inst/doc/h5-Intro.html
inst/doc/h5-Intro.Rmd
inst/doc/RFin16.html
inst/doc/RFin16.R
inst/doc/RFin16.Rmd
inst/doc/h5-Intro.R
inst/test-ascii-length-bug.h5
inst/include
inst/include/h5.h
configure.ac
tests
tests/testthat.R
tests/testthat
tests/testthat/test-H5File.R
tests/testthat/test-Attribute.R
tests/testthat/test-enum.R
tests/testthat/test-io.R
tests/testthat/test-H5Group.R
tests/testthat/test-DataSet-Select-Subset.R
tests/testthat/test-DataSet-Select-Elem.R
tests/testthat/test-DataSet-IO.R
tests/testthat/test-DataSet-Select-Hyperslab.R
tests/testthat/test-vlen.R
tests/testthat/test-DataSet-IO-NA.R
tests/testthat/test-H5File-Subset.R
tests/testthat/test-DataSet.R
tests/testthat/test-DataSet-extend.R
src
src/Dataspace.h
src/Attribute.h
src/Helpers.cpp
src/Dataspace.cpp
src/Group.cpp
src/Helpers.h
src/Dataset.cpp
src/File.cpp
src/File.h
src/Group.h
src/Makevars.in
src/Dataset.h
src/Makevars.win
src/RcppExports.cpp
src/Attribute.cpp
NAMESPACE
INSTALL
R
R/Dataset-Extend.R
R/H5Group.R
R/Dataset-Subset.R
R/CommonFG-Group.R
R/DataSet.R
R/h5-package.R
R/Attribute.R
R/RcppExports.R
R/CommonFG.R
R/Helpers.R
R/H5Location-Attribute.R
R/H5File.R
R/DataSpace.R
R/CommonFG-DataSet.R
vignettes
vignettes/ex-matlab.mat
vignettes/h5.bib
vignettes/h5-Intro.Rmd
vignettes/RFin16.Rmd
vignettes/ex-pandas.h5
MD5
build
build/vignette.rds
DESCRIPTION
configure
man
man/H5Location-Attribute.Rd
man/DataSet.Rd
man/h5-package.Rd
man/H5Group.Rd
man/DataSet-Extend.Rd
man/Attribute.Rd
man/CommonFG-Group.Rd
man/DataSpace.Rd
man/CommonFG-DataSet.Rd
man/CommonFG.Rd
man/DataSet-Subset.Rd
man/H5File.Rd
configure.win
cleanup
LICENSE
h5 documentation built on May 20, 2017, 1:29 a.m.