hSDM is an R package for estimating parameters of hierarchical Bayesian species distribution models. Such models allow interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their probability of occurrence, and assessing uncertainty in the model results.
|Author||Ghislain Vieilledent, Cory Merow, Jérôme Guélat, Andrew M. Latimer, Marc Kéry, Alan E. Gelfand, Adam M. Wilson, Frédéric Mortier and John A. Silander Jr.|
|Date of publication||2014-07-02 09:33:09|
|Maintainer||Ghislain Vieilledent <email@example.com>|
|License||GPL-3 | file LICENSE|
altitude: Virtual altitudinal data
cfr.env: Environmental data for South Africa's Cap Floristic Region
datacells.Latimer2006: Data of presence-absence (from Latimer et al. 2006)
data.Kery2010: Count data for the Willow tit (from Kéry and Royle 2010)
hSDM.binomial: Binomial logistic regression model
hSDM.binomial.iCAR: Binomial logistic regression model with CAR process
hSDM.Nmixture: N-mixture model
hSDM.Nmixture.iCAR: N-mixture model with CAR process
hSDM-package: hierarchical Bayesian species distribution models
hSDM.poisson: Poisson log regression model
hSDM.poisson.iCAR: Poisson log regression model with CAR process
hSDM.siteocc: Site occupancy model
hSDM.siteocc.iCAR: Site-occupancy model with CAR process
hSDM.ZIB: ZIB (Zero-Inflated Binomial) model
hSDM.ZIB.iCAR: ZIB (Zero-Inflated Binomial) model with CAR process
hSDM.ZIB.iCAR.alteration: ZIB (Zero-Inflated Binomial) model with CAR process taking...
hSDM.ZIP: ZIP (Zero-Inflated Poisson) model
hSDM.ZIP.iCAR: ZIP (Zero-Inflated Poisson) model with CAR process
hSDM.ZIP.iCAR.alteration: ZIP (Zero-Inflated Poisson) model with CAR process taking...
logit: Generalized logit and inverse logit function
neighbors.Latimer2006: Neighborhood data (from Latimer et al. 2006)
punc10: Occurrence data for _Protea punctata_ Meisn. in the Cap...