hSDM: hierarchical Bayesian species distribution models

hSDM is an R package for estimating parameters of hierarchical Bayesian species distribution models. Such models allow interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their probability of occurrence, and assessing uncertainty in the model results.

AuthorGhislain Vieilledent, Cory Merow, Jérôme Guélat, Andrew M. Latimer, Marc Kéry, Alan E. Gelfand, Adam M. Wilson, Frédéric Mortier and John A. Silander Jr.
Date of publication2014-07-02 09:33:09
MaintainerGhislain Vieilledent <ghislain.vieilledent@cirad.fr>
LicenseGPL-3 | file LICENSE
Version1.4
http://hSDM.sf.net

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Files in this package

hSDM
hSDM/COPYING
hSDM/src
hSDM/src/hSDM.siteocc.c
hSDM/src/hSDM.poisson.c
hSDM/src/hSDM.binomial.iCAR.c
hSDM/src/hSDM.Nmixture.c
hSDM/src/hSDM.ZIB.c
hSDM/src/hSDM.ZIP.c
hSDM/src/hSDM.siteocc.iCAR.c
hSDM/src/hSDM.poisson.iCAR.c
hSDM/src/hSDM.binomial.c
hSDM/src/hSDM.ZIB.iCAR.c
hSDM/src/useful.h
hSDM/src/useful.c
hSDM/src/hSDM.ZIP.iCAR.c
hSDM/src/hSDM.ZIB.iCAR.alteration.c
hSDM/src/hSDM.Nmixture.iCAR.c
hSDM/src/hSDM.ZIP.iCAR.alteration.c
hSDM/NAMESPACE
hSDM/data
hSDM/data/neighbors.Latimer2006.rda
hSDM/data/data.Kery2010.rda
hSDM/data/datacells.Latimer2006.rda
hSDM/data/cfr.env.rda
hSDM/data/altitude.rda
hSDM/data/punc10.rda
hSDM/R
hSDM/R/hSDM.siteocc.R hSDM/R/hSDM.ZIB.R hSDM/R/logit.R hSDM/R/hSDM.ZIP.iCAR.alteration.R hSDM/R/hSDM.ZIB.iCAR.R hSDM/R/hSDM.ZIP.R hSDM/R/hSDM.Nmixture.iCAR.R hSDM/R/hSDM.poisson.iCAR.R hSDM/R/hSDM.binomial.iCAR.R hSDM/R/hSDM.Nmixture.R hSDM/R/hidden.R hSDM/R/hSDM.poisson.R hSDM/R/hSDM.siteocc.iCAR.R hSDM/R/hSDM.binomial.R hSDM/R/hSDM.ZIB.iCAR.alteration.R hSDM/R/hSDM.ZIP.iCAR.R hSDM/R/zzz.R
hSDM/README.md
hSDM/MD5
hSDM/DESCRIPTION
hSDM/man
hSDM/man/hSDM.binomial.iCAR.Rd hSDM/man/hSDM.ZIB.iCAR.alteration.Rd hSDM/man/hSDM.binomial.Rd hSDM/man/hSDM.poisson.Rd hSDM/man/hSDM-package.Rd hSDM/man/hSDM.Nmixture.iCAR.Rd hSDM/man/cfr.env.Rd hSDM/man/hSDM.siteocc.Rd hSDM/man/logit.Rd hSDM/man/hSDM.siteocc.iCAR.Rd hSDM/man/data.Kery2010.Rd hSDM/man/neighbors.Latimer2006.Rd hSDM/man/hSDM.ZIP.iCAR.alteration.Rd hSDM/man/altitude.Rd hSDM/man/hSDM.ZIB.Rd hSDM/man/hSDM.poisson.iCAR.Rd hSDM/man/datacells.Latimer2006.Rd hSDM/man/hSDM.ZIB.iCAR.Rd hSDM/man/punc10.Rd hSDM/man/hSDM.ZIP.Rd hSDM/man/hSDM.Nmixture.Rd hSDM/man/hSDM.ZIP.iCAR.Rd
hSDM/LICENSE

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