Nothing
# Single Chain ------------------------------------------------------------
# test_that("analyze questioned documents works with a single chain", {
# iters <- 200 # number of MCMC iterations in example_model_1chain
# template_dir <- test_path("fixtures", "template")
# questioned_docs <- system.file("extdata/example_images/questioned_docs", package = "handwriter")
# analysis <- analyze_questioned_documents(template_dir = template_dir,
# questioned_images_dir = questioned_docs,
# model = example_model_1chain,
# num_cores = 2,
# writer_indices = c(2,5),
# doc_indices = c(7,17))
#
# # expect named list
# expect_named(analysis, c("likelihood_evals", "votes", "posterior_probabilities", "graph_measurements",
# "cluster_fill_counts"))
#
# # check cluster fill counts column names
# expect_equal(colnames(example_model_1chain$cluster_fill_counts), colnames(analysis$cluster_fill_counts))
#
# # check vote totals
# sapply(analysis$votes, function(x) expect_equal(sum(x), iters))
#
# # check posterior probability totals
# sapply(analysis$posterior_probabilities[,-1], function(x) expect_equal(sum(x), 1))
# })
test_that("calculate accuracy works on a single chain", {
accuracy <- calculate_accuracy(example_analysis_1chain)
expect_equal(accuracy, 0.86)
})
# Multiple Chains ---------------------------------------------------------
# test_that("analyze questioned documents works with multiple chains", {
# iters <- 200 # number of MCMC iterations per chain in example_model_2chains
# template_dir <- test_path("fixtures", "template")
# questioned_docs <- system.file("extdata/example_images/questioned_docs", package = "handwriter")
# analysis <- analyze_questioned_documents(template_dir = template_dir,
# questioned_images_dir = questioned_docs,
# model = example_model_2chains,
# num_cores = 2,
# writer_indices = c(2,5),
# doc_indices = c(7,17))
#
# # expect named list
# expect_named(analysis, c("likelihood_evals", "votes", "posterior_probabilities", "graph_measurements",
# "cluster_fill_counts"))
#
# # check cluster fill counts column names
# expect_equal(colnames(example_model_2chains$cluster_fill_counts), colnames(analysis$cluster_fill_counts))
#
# # check vote totals
# sapply(analysis$votes, function(x) expect_equal(sum(x), 2*iters))
#
# # check posterior probability totals
# sapply(analysis$posterior_probabilities[,-1], function(x) expect_equal(sum(x), 1))
# })
test_that("calculate accuracy works on mulitple chains", {
accuracy <- calculate_accuracy(example_analysis_2chains)
expect_equal(accuracy, 0.8605)
})
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