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haplotyper: Tool for Clustering Genotypes in Haplotypes
Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.
Getting started
Browse package contents
Package details |
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| Author | Sebastian Simondi <sebastian.simondi@gmail.com> and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez |
| Maintainer | Gaston Quero <gastonquero@gmail.com> |
| License | GPL-3 |
| Version | 0.1 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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