hiPOD: hierarchical Pooled Optimal Design

Based on hierarchical modeling, this package provides a few practical functions to find and present the optimal designs for a pooled NGS design.

Author
Wei E. Liang
Date of publication
2012-06-01 14:26:57
Maintainer
Wei E. Liang <liang1@usc.edu>
License
GPL-3
Version
1.0

View on CRAN

Man pages

diffVariantError
differentiate a variant from sequencing error
FindOptPower
search for the optimal pooled design
hiPOD-package
hierarchial Pooled Optimal Design
ncp.pool.pred
prediction model of the non-centrality parameter from...
PlotOptPower
Plots a contour plot / 3d plot of the power of the potential...
predictPoolNCP
The prediction model of non-centrality parameter
probDetEqual3
Probability of Detection
ShowOptDesign
Print the top choices of designs
XmeanGivenCost
A function used to find best coverage given cost and other...

Files in this package

hiPOD
hiPOD/MD5
hiPOD/R
hiPOD/R/XmeanGivenCost.R
hiPOD/R/ShowOptDesign.R
hiPOD/R/probDetEqual3.R
hiPOD/R/predictPoolNCP.R
hiPOD/R/PlotOptPower.R
hiPOD/R/FindOptPower.R
hiPOD/R/diffVariantError.R
hiPOD/NAMESPACE
hiPOD/man
hiPOD/man/XmeanGivenCost.Rd
hiPOD/man/ShowOptDesign.Rd
hiPOD/man/probDetEqual3.Rd
hiPOD/man/predictPoolNCP.Rd
hiPOD/man/PlotOptPower.Rd
hiPOD/man/ncp.pool.pred.Rd
hiPOD/man/hiPOD-package.Rd
hiPOD/man/FindOptPower.Rd
hiPOD/man/diffVariantError.Rd
hiPOD/DESCRIPTION
hiPOD/data
hiPOD/data/ncp.pool.pred.rda