hiPOD: hierarchical Pooled Optimal Design
Version 1.0

Based on hierarchical modeling, this package provides a few practical functions to find and present the optimal designs for a pooled NGS design.

Browse man pages Browse package API and functions Browse package files

AuthorWei E. Liang
Date of publication2012-06-01 14:26:57
MaintainerWei E. Liang <liang1@usc.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("hiPOD")

Man pages

diffVariantError: differentiate a variant from sequencing error
FindOptPower: search for the optimal pooled design
hiPOD-package: hierarchial Pooled Optimal Design
ncp.pool.pred: prediction model of the non-centrality parameter from...
PlotOptPower: Plots a contour plot / 3d plot of the power of the potential...
predictPoolNCP: The prediction model of non-centrality parameter
probDetEqual3: Probability of Detection
ShowOptDesign: Print the top choices of designs
XmeanGivenCost: A function used to find best coverage given cost and other...

Functions

FindOptPower Man page Source code
PlotOptPower Man page Source code
ShowOptDesign Man page Source code
XmeanGivenCost Man page Source code
diffVariantError Man page Source code
hiPOD Man page
hiPOD-package Man page
ncp.pool.pred Man page
predictPoolNCP Man page Source code
probDetEqual3 Man page Source code

Files

MD5
R
R/XmeanGivenCost.R
R/ShowOptDesign.R
R/probDetEqual3.R
R/predictPoolNCP.R
R/PlotOptPower.R
R/FindOptPower.R
R/diffVariantError.R
NAMESPACE
man
man/XmeanGivenCost.Rd
man/ShowOptDesign.Rd
man/probDetEqual3.Rd
man/predictPoolNCP.Rd
man/PlotOptPower.Rd
man/ncp.pool.pred.Rd
man/hiPOD-package.Rd
man/FindOptPower.Rd
man/diffVariantError.Rd
DESCRIPTION
data
data/ncp.pool.pred.rda
hiPOD documentation built on May 19, 2017, 6:55 a.m.