pighic: Dataset "pighic"
In hicream: HI-C diffeREntial Analysis Method
pighic R Documentation
Dataset "pighic"
Description
6 Hi-C matrices (3 in each condition) obtained from two
different developmental stages of pig embryos (90 and 110 days of gestation)
corresponding to chromosome 1.
Format
An object with two entries:
- data
an object of class
InteractionSet
containing 6 Hi-C matrices from 2 conditions (3 each) for 21 interactions.
- conditions
a two-level factor indicating the condition of each matrix
in data.
Details
The data are identical to the dataset present in the package
treediff.
References
Nathalie Vialaneix, Gwendaelle Cardenas, Marie Chavent,
Sylvain Foissac, Pierre Neuvial, and Nathanael Randriamihamison (2023).
treediff: Testing Differences Between Families of Trees.
https://cran.r-project.org/package=treediff
Examples
data(pighic)
hicream documentation built on Aug. 8, 2025, 7:26 p.m.
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| pighic | R Documentation |
Dataset "pighic"
Description
6 Hi-C matrices (3 in each condition) obtained from two different developmental stages of pig embryos (90 and 110 days of gestation) corresponding to chromosome 1.
Format
An object with two entries:
- data
an object of class
InteractionSetcontaining 6 Hi-C matrices from 2 conditions (3 each) for 21 interactions.- conditions
a two-level factor indicating the condition of each matrix in
data.
Details
The data are identical to the dataset present in the package
treediff.
References
Nathalie Vialaneix, Gwendaelle Cardenas, Marie Chavent, Sylvain Foissac, Pierre Neuvial, and Nathanael Randriamihamison (2023). treediff: Testing Differences Between Families of Trees. https://cran.r-project.org/package=treediff
Examples
data(pighic)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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