compute_chrom_length: Computes chromosomes' length

In hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results

Computes chromosomes' length

Description

Computes the length (in bp) of each chromosome as the maximum position of markers or genes on the chromosome.

Usage

compute_chrom_length(x)

## S3 method for class 'GWAS_data'
compute_chrom_length(x)

## S3 method for class 'DE_data'
compute_chrom_length(x)

## S3 method for class 'CAN_data'
compute_chrom_length(x)

Arguments

x	Either a GWAS_data, DE_data or CAN_data object.

Value

A tibble with two columns: chromosome (chromosome name) and length (chromosome length in base pair).

Examples

x <- get_example_data()

compute_chrom_length(GWAS_data(x[["GWAS"]]))
compute_chrom_length(DE_data(x[["DE"]]))
compute_chrom_length(CAN_data(x[["CAN"]]))

hidecan documentation built on Feb. 16, 2023, 6:22 p.m.