hierDiversity: Hierarchical Multiplicative Partitioning of Complex Phenotypes

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Hierarchical group-wise partitioning of phenotypic diversity into within-group (alpha), among-group (beta), and pooled-total (gamma) components using Hill numbers. Turnover and overlap are also calculated as standardized alternatives to beta diversity. Hierarchical bootstrapping is used to approximate uncertainty around each diversity component.

Author
Zachary Marion, James Fordyce, and Benjamin Fitzpatrick
Date of publication
2015-03-20 18:05:19
Maintainer
Zachary Marion <zmarion@vols.utk.edu>
License
GPL (>= 2)
Version
0.1

View on CRAN

Man pages

dz
Effective Numbers for Alpha, Beta, and Gamma Diversity...
hierDiversity
Hierarchical Group-wise Diversity Partitioning
hierDiversity-package
Hierarchical Multiplicative Partitioning of Diversity and...
milkweedData
Milkweed Chemical Defense Data

Files in this package

hierDiversity
hierDiversity/NAMESPACE
hierDiversity/data
hierDiversity/data/milkweedVars.rda
hierDiversity/data/milkweedData.rda
hierDiversity/R
hierDiversity/R/normalizeRows.R
hierDiversity/R/dz.R
hierDiversity/R/hierDiversity.R
hierDiversity/R/comp.div.R
hierDiversity/R/hierDiversity-internal.R
hierDiversity/R/div.part.R
hierDiversity/R/booties.R
hierDiversity/R/reSample.R
hierDiversity/R/pqSum.R
hierDiversity/MD5
hierDiversity/DESCRIPTION
hierDiversity/man
hierDiversity/man/dz.Rd
hierDiversity/man/hierDiversity.Rd
hierDiversity/man/hierDiversity-package.Rd
hierDiversity/man/milkweedData.Rd