Implements the method developed by Cao and Kosorok (2011) for the significance analysis of thousands of features in high-dimensional biological studies. It is an asymptotically valid data-driven procedure to find critical values for rejection regions controlling the k-familywise error rate, false discovery rate, and the tail probability of false discovery proportion.
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| Author | Hongyuan Cao [aut], Michael Kosorok [aut], Shannon Holloway [aut, cre] |
| Date of publication | 2015-02-22 00:09:18 |
| Maintainer | Shannon Holloway <sthollow@ncsu.edu> |
| License | GPL-2 |
| Version | 1.1 |
| Package repository | View on CRAN |
| Installation | Install the latest version of this package by entering the following in R:
|
Functions | |
|---|---|
| BH | Man page |
| BH,highTtest | Man page |
| BH,highTtest-method | Man page |
| BenjaminiHochberg | Source code |
| CK | Man page |
| CK,highTtest | Man page |
| CK,highTtest-method | Man page |
| CaoKosorok | Source code |
| ST | Man page |
| ST,highTtest | Man page |
| ST,highTtest-method | Man page |
| StoreyTibshirani | Source code |
| highTtest | Man page Source code |
| highTtest-class | Man page |
| pi_alt | Man page |
| pi_alt,highTtest | Man page |
| pi_alt,highTtest-method | Man page |
| plot,ANY-method | Man page |
| plot,highTtest | Man page |
| plot,highTtest-method | Man page |
| plot-methods | Man page |
| plotI_Lines | Source code |
| plotI_Points | Source code |
| pvalue | Man page |
| pvalue,highTtest | Man page |
| pvalue,highTtest-method | Man page |
| tStatistic | Source code |
| venn2 | Source code |
| venn3 | Source code |
| vennD | Man page |
| vennD,highTtest | Man page |
| vennD,highTtest,numeric-method | Man page |
| vennD-methods | Man page |
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