hbl_plot_borrow: Plot the hierarchical model response against the benchmark...

In historicalborrowlong: Longitudinal Bayesian Historical Borrowing Models

Plot the hierarchical model response against the benchmark models.

Description

Plot the response from a hierarchical model. against the independent and pooled benchmark models.

Usage

hbl_plot_borrow(
  borrow,
  pool,
  independent,
  outcome = c("response", "change", "diff")
)

Arguments

borrow	A data frame returned by hbl_summary() for the hierarchical model.
pool	A data frame returned by hbl_summary() for the pooled model.
independent	A data frame returned by hbl_summary() for the independent model.
outcome	Character of length 1, either "response", "change", or "diff": the quantity to plot on the vertical axis.

Value

A ggplot object

See Also

Other plot: hbl_plot_group(), hbl_plot_tau()

Examples

if (!identical(Sys.getenv("HBL_TEST", unset = ""), "")) {
set.seed(0)
data <- hbl_sim_independent(
  n_study = 2,
  n_group = 2,
  n_patient = 5,
  n_rep = 3
)$data
tmp <- utils::capture.output(
  suppressWarnings(
    mcmc_borrow <- hbl_mcmc_hierarchical(
      data,
      chains = 1,
      warmup = 10,
      iter = 20,
      seed = 0
    )
  )
)
tmp <- utils::capture.output(
  suppressWarnings(
    mcmc_pool <- hbl_mcmc_pool(
      data,
      chains = 1,
      warmup = 10,
      iter = 20,
      seed = 0
    )
  )
)
tmp <- utils::capture.output(
  suppressWarnings(
    mcmc_independent <- hbl_mcmc_independent(
      data,
      chains = 1,
      warmup = 10,
      iter = 20,
      seed = 0
    )
  )
)
borrow <- hbl_summary(mcmc_borrow, data)
pool <- hbl_summary(mcmc_pool, data)
independent <- hbl_summary(mcmc_independent, data)
hbl_plot_borrow(
  borrow = borrow,
  pool = pool,
  independent = independent
)
}

historicalborrowlong documentation built on Sept. 30, 2024, 9:40 a.m.