h2_pairwise: Pairwise Interaction Strength

In hstats: Interaction Statistics

Pairwise Interaction Strength

Description

Friedman and Popescu's statistic of pairwise interaction strength, see Details. Use plot() to get a barplot.

Usage

h2_pairwise(object, ...)

## Default S3 method:
h2_pairwise(object, ...)

## S3 method for class 'hstats'
h2_pairwise(
  object,
  normalize = TRUE,
  squared = TRUE,
  sort = TRUE,
  zero = TRUE,
  ...
)

Arguments

object	Object of class "hstats".
...	Currently unused.
normalize	Should statistics be normalized? Default is TRUE.
squared	Should squared statistics be returned? Default is TRUE.
sort	Should results be sorted? Default is TRUE. (Multi-output is sorted by row means.)
zero	Should rows with all 0 be shown? Default is TRUE.

Details

Following Friedman and Popescu (2008), if there are no interaction effects between features x_j and x_k, their two-dimensional (centered) partial dependence function F_{jk} can be written as the sum of the (centered) univariate partial dependencies F_j and F_k, i.e.,

F_{jk}(x_j, x_k) = F_j(x_j)+ F_k(x_k).

Correspondingly, Friedman and Popescu's statistic of pairwise interaction strength between x_j and x_k is defined as

H_{jk}^2 = \frac{A_{jk}}{\frac{1}{n} \sum_{i = 1}^n\big[\hat F_{jk}(x_{ij}, x_{ik})\big]^2},

where

A_{jk} = \frac{1}{n} \sum_{i = 1}^n\big[\hat F_{jk}(x_{ij}, x_{ik}) - \hat F_j(x_{ij}) - \hat F_k(x_{ik})\big]^2

(check partial_dep() for all definitions).

Remarks:

1. Remarks 1 to 5 of h2_overall() also apply here.

2. H^2_{jk} = 0 means there are no interaction effects between x_j and x_k. The larger the value, the more of the joint effect of the two features comes from the interaction.

3. Since the denominator differs between variable pairs, unlike H_j, this test statistic is difficult to compare between variable pairs. If both main effects are very weak, a negligible interaction can get a high H^2_{jk}. Therefore, Friedman and Popescu (2008) suggests to calculate H^2_{jk} only for important variables (see "Modification" below).

Modification

To be better able to compare pairwise interaction strength across variable pairs, and to overcome the problem mentioned in the last remark, we suggest as alternative the unnormalized test statistic on the scale of the predictions, i.e., \sqrt{A_{jk}}. Set normalize = FALSE and squared = FALSE to obtain this statistic. Furthermore, instead of focusing on pairwise calculations for the most important features, we can select features with strongest overall interactions.

Value

An object of class "hstats_matrix" containing these elements:

• M: Matrix of statistics (one column per prediction dimension), or NULL.

• SE: Matrix with standard errors of M, or NULL. Multiply with sqrt(m_rep) to get standard deviations instead. Currently, supported only for perm_importance().

• m_rep: The number of repetitions behind standard errors SE, or NULL. Currently, supported only for perm_importance().

• statistic: Name of the function that generated the statistic.

• description: Description of the statistic.

Methods (by class)

• h2_pairwise(default): Default pairwise interaction strength.

• h2_pairwise(hstats): Pairwise interaction strength from "hstats" object.

References

Friedman, Jerome H., and Bogdan E. Popescu. "Predictive Learning via Rule Ensembles." The Annals of Applied Statistics 2, no. 3 (2008): 916-54.

See Also

hstats(), h2(), h2_overall(), h2_threeway()

Examples

# MODEL 1: Linear regression
fit <- lm(Sepal.Length ~ . + Petal.Width:Species, data = iris)
s <- hstats(fit, X = iris[, -1])

# Proportion of joint effect coming from pairwise interaction
# (for features with strongest overall interactions)
h2_pairwise(s)
h2_pairwise(s, zero = FALSE)  # Drop 0

# Absolute measure as alternative
abs_h <- h2_pairwise(s, normalize = FALSE, squared = FALSE, zero = FALSE)
abs_h
abs_h$M

# MODEL 2: Multi-response linear regression
fit <- lm(as.matrix(iris[, 1:2]) ~ Petal.Length + Petal.Width * Species, data = iris)
s <- hstats(fit, X = iris[, 3:5], verbose = FALSE)
x <- h2_pairwise(s)
plot(x)

hstats documentation built on May 29, 2024, 6:43 a.m.