hwde: Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci
Version 0.67

Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium.

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AuthorJohn Maindonald, with \code{hwexact()} from Randall Johnson.
Date of publication2016-01-01 20:58:16
MaintainerJohn Maindonald <John.Maindonald@anu.edu.au>
LicenseGPL (>= 2)
Version0.67
URL http://maths-people.anu.edu.au/~johnm
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("hwde")

Man pages

decode.genotypes: Creates contrasts that relate to a single locus
hwde: Fit relevant models, and test for various types of departure...
hwexact: Exact test of HWE
IndianIrish: Observed genotype frequencies at MN and S loci, for 2...
make.contrasts: Calculate contrasts required by the function
MendelABC: Mendel's F2 trifactorial data for seed shape (A: round or...

Functions

IndianIrish Man page
decode.genotypes Man page
hwde Man page Source code
hwexact Man page
make.contrasts Man page Source code
mendelABC Man page
snphwe Man page

Files

COPYING
inst
inst/doc
inst/doc/hwde.R
inst/doc/IndianIrish.txt
inst/doc/hwde.Rnw
inst/doc/hw.txt
inst/doc/hwde.pdf
NAMESPACE
NEWS
data
data/mendelABC.RData
data/IndianIrish.RData
R
R/decode.genotypes.R
R/hwexact.R
R/hwde.R
R/make.contrasts.R
R/snphwe.R
vignettes
vignettes/hwde.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/hwde.Rd
man/make.contrasts.Rd
man/hwexact.Rd
man/decode.genotypes.Rd
man/MendelABC.Rd
man/IndianIrish.Rd
hwde documentation built on May 19, 2017, 9:37 p.m.