hwde: Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci

Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium.

AuthorJohn Maindonald, with \code{hwexact()} from Randall Johnson.
Date of publication2016-01-01 20:58:16
MaintainerJohn Maindonald <John.Maindonald@anu.edu.au>
LicenseGPL (>= 2)
Version0.67
http://maths-people.anu.edu.au/~johnm

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Files in this package

hwde
hwde/COPYING
hwde/inst
hwde/inst/doc
hwde/inst/doc/hwde.R
hwde/inst/doc/IndianIrish.txt
hwde/inst/doc/hwde.Rnw
hwde/inst/doc/hw.txt
hwde/inst/doc/hwde.pdf
hwde/NAMESPACE
hwde/NEWS
hwde/data
hwde/data/mendelABC.RData
hwde/data/IndianIrish.RData
hwde/R
hwde/R/decode.genotypes.R hwde/R/hwexact.R hwde/R/hwde.R hwde/R/make.contrasts.R hwde/R/snphwe.R
hwde/vignettes
hwde/vignettes/hwde.Rnw
hwde/MD5
hwde/build
hwde/build/vignette.rds
hwde/DESCRIPTION
hwde/man
hwde/man/hwde.Rd hwde/man/make.contrasts.Rd hwde/man/hwexact.Rd hwde/man/decode.genotypes.Rd hwde/man/MendelABC.Rd hwde/man/IndianIrish.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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