dist.bin.3col: Convert a list of dist (or matrixes) to a matrix

In iCAMP: Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based Null Model Analysis

Convert a list of dist (or matrixes) to a matrix

Description

Convert a list of distance matrixes (or square matrixes) with the same sample IDs into a matrix.

Usage

dist.bin.3col(dist.bin, obj.name = NULL)

Arguments

dist.bin	a list, each element is a distance matrix or square matrix. all elements have exactly the same sample IDs (rownames and colnames) which are in the same order.
obj.name	a character, as a prefix of the bin names.

Details

A tool to facilitate format transformation in iCAMP analysis.

Value

output is a matrix. The first two columns are sample IDs, and each of the following columns represent an element in the original list which usually is a bin in iCAMP analysis.

Note

Version 2: 2020.8.18, add example Version 1: 2015.8.30

Author(s)

Daliang Ning

Examples

# let's see a very simple example
bin.dist=as.matrix(dist(1:10))
rownames(bin.dist)<-colnames(bin.dist)<-paste0("Sample",1:10)
dist.bins=list(bin1=bin.dist,bin2=bin.dist+1,bin3=bin.dist*2)
dis.3c=dist.bin.3col(dist.bins,obj.name="test")

iCAMP documentation built on June 1, 2022, 9:08 a.m.