iDOS: Integrated Discovery of Oncogenic Signatures

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Integrate molecular profiles to discover candidate oncogenic drivers.

Author
Syed Haider, Francesca M Buffa
Date of publication
2016-07-27 20:25:35
Maintainer
Syed Haider <Syed.Haider@oncology.ox.ac.uk>
License
GPL-2
Version
1.0.0

View on CRAN

Man pages

create.counts.table
create.counts.table
create.training.validation.split
create.training.validation.split
estimate.expression.cna.correlation
estimate.expression.cna.correlation
estimate.null.distribution.correlation
estimate.null.distribution.correlation
find.DE.features
find.DE.features
get.program.defaults
get.program.defaults
get.test.data
get.test.data
get.top.features
get.top.features
iDOS-package
Integrated Discovery of Oncogenic Signatures
load.datasets
load.datasets

Files in this package

iDOS
iDOS/inst
iDOS/inst/programdata
iDOS/inst/programdata/testdata
iDOS/inst/programdata/testdata/metadata.txt
iDOS/inst/programdata/testdata/LUAD
iDOS/inst/programdata/testdata/LUAD/tumour
iDOS/inst/programdata/testdata/LUAD/tumour/mRNA_abundance_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/LUAD/tumour/cna_calls_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/LUAD/tumour/cna_fractions_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/LUAD/tumour/cna_log2_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/LUAD/tumour/annotation.txt
iDOS/inst/programdata/testdata/LUAD/normal
iDOS/inst/programdata/testdata/LUAD/normal/mRNA_abundance_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/BLCA
iDOS/inst/programdata/testdata/BLCA/tumour
iDOS/inst/programdata/testdata/BLCA/tumour/mRNA_abundance_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/BLCA/tumour/cna_calls_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/BLCA/tumour/cna_fractions_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/BLCA/tumour/cna_log2_hgncsymbol.txt.gz
iDOS/inst/programdata/testdata/BLCA/tumour/annotation.txt
iDOS/inst/programdata/testdata/BLCA/normal
iDOS/inst/programdata/testdata/BLCA/normal/mRNA_abundance_hgncsymbol.txt.gz
iDOS/NAMESPACE
iDOS/NEWS
iDOS/R
iDOS/R/estimate.null.distribution.correlation.R
iDOS/R/get.program.defaults.R
iDOS/R/get.test.data.R
iDOS/R/estimate.expression.cna.correlation.R
iDOS/R/get.top.features.R
iDOS/R/create.counts.table.R
iDOS/R/create.training.validation.split.R
iDOS/R/find.DE.features.R
iDOS/R/load.datasets.R
iDOS/MD5
iDOS/DESCRIPTION
iDOS/man
iDOS/man/create.training.validation.split.Rd
iDOS/man/load.datasets.Rd
iDOS/man/get.test.data.Rd
iDOS/man/estimate.expression.cna.correlation.Rd
iDOS/man/get.program.defaults.Rd
iDOS/man/create.counts.table.Rd
iDOS/man/get.top.features.Rd
iDOS/man/find.DE.features.Rd
iDOS/man/estimate.null.distribution.correlation.Rd
iDOS/man/iDOS-package.Rd