iDOS: Integrated Discovery of Oncogenic Signatures
Version 1.0.0

Integrate molecular profiles to discover candidate oncogenic drivers.

AuthorSyed Haider, Francesca M Buffa
Date of publication2016-07-27 20:25:35
MaintainerSyed Haider <Syed.Haider@oncology.ox.ac.uk>
LicenseGPL-2
Version1.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("iDOS")

Getting started

Package overview

Popular man pages

create.counts.table: create.counts.table
create.training.validation.split: create.training.validation.split
estimate.expression.cna.correlation: estimate.expression.cna.correlation
get.test.data: get.test.data
get.top.features: get.top.features
iDOS-package: Integrated Discovery of Oncogenic Signatures
load.datasets: load.datasets
See all...

All man pages Function index File listing

Man pages

create.counts.table: create.counts.table
create.training.validation.split: create.training.validation.split
estimate.expression.cna.correlation: estimate.expression.cna.correlation
estimate.null.distribution.correlation: estimate.null.distribution.correlation
find.DE.features: find.DE.features
get.program.defaults: get.program.defaults
get.test.data: get.test.data
get.top.features: get.top.features
iDOS-package: Integrated Discovery of Oncogenic Signatures
load.datasets: load.datasets

Functions

Files

inst
inst/programdata
inst/programdata/testdata
inst/programdata/testdata/metadata.txt
inst/programdata/testdata/LUAD
inst/programdata/testdata/LUAD/tumour
inst/programdata/testdata/LUAD/tumour/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_calls_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_fractions_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_log2_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/annotation.txt
inst/programdata/testdata/LUAD/normal
inst/programdata/testdata/LUAD/normal/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA
inst/programdata/testdata/BLCA/tumour
inst/programdata/testdata/BLCA/tumour/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_calls_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_fractions_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_log2_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/annotation.txt
inst/programdata/testdata/BLCA/normal
inst/programdata/testdata/BLCA/normal/mRNA_abundance_hgncsymbol.txt.gz
NAMESPACE
NEWS
R
R/estimate.null.distribution.correlation.R
R/get.program.defaults.R
R/get.test.data.R
R/estimate.expression.cna.correlation.R
R/get.top.features.R
R/create.counts.table.R
R/create.training.validation.split.R
R/find.DE.features.R
R/load.datasets.R
MD5
DESCRIPTION
man
man/create.training.validation.split.Rd
man/load.datasets.Rd
man/get.test.data.Rd
man/estimate.expression.cna.correlation.Rd
man/get.program.defaults.Rd
man/create.counts.table.Rd
man/get.top.features.Rd
man/find.DE.features.Rd
man/estimate.null.distribution.correlation.Rd
man/iDOS-package.Rd
iDOS documentation built on May 20, 2017, 3:20 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.