iDOS: Integrated Discovery of Oncogenic Signatures

Integrate molecular profiles to discover candidate oncogenic drivers.

Install the latest version of this package by entering the following in R:
install.packages("iDOS")
AuthorSyed Haider, Francesca M Buffa
Date of publication2016-07-27 20:25:35
MaintainerSyed Haider <Syed.Haider@oncology.ox.ac.uk>
LicenseGPL-2
Version1.0.0

View on CRAN

Files

inst
inst/programdata
inst/programdata/testdata
inst/programdata/testdata/metadata.txt
inst/programdata/testdata/LUAD
inst/programdata/testdata/LUAD/tumour
inst/programdata/testdata/LUAD/tumour/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_calls_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_fractions_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/cna_log2_hgncsymbol.txt.gz
inst/programdata/testdata/LUAD/tumour/annotation.txt
inst/programdata/testdata/LUAD/normal
inst/programdata/testdata/LUAD/normal/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA
inst/programdata/testdata/BLCA/tumour
inst/programdata/testdata/BLCA/tumour/mRNA_abundance_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_calls_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_fractions_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/cna_log2_hgncsymbol.txt.gz
inst/programdata/testdata/BLCA/tumour/annotation.txt
inst/programdata/testdata/BLCA/normal
inst/programdata/testdata/BLCA/normal/mRNA_abundance_hgncsymbol.txt.gz
NAMESPACE
NEWS
R
R/estimate.null.distribution.correlation.R R/get.program.defaults.R R/get.test.data.R R/estimate.expression.cna.correlation.R R/get.top.features.R R/create.counts.table.R R/create.training.validation.split.R R/find.DE.features.R R/load.datasets.R
MD5
DESCRIPTION
man
man/create.training.validation.split.Rd man/load.datasets.Rd man/get.test.data.Rd man/estimate.expression.cna.correlation.Rd man/get.program.defaults.Rd man/create.counts.table.Rd man/get.top.features.Rd man/find.DE.features.Rd man/estimate.null.distribution.correlation.Rd man/iDOS-package.Rd

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