iECAT.SSD.All: Integrating External Controls to Association Tests

In iECAT: Integrating External Controls into Association Test

Description

Iteratively carry out association tests with phenotypes and SNP sets in SSD file.

Usage

	iECAT.SSD.All(EC.INFO, obj, ..., obj.SNPWeight=NULL)

 

Arguments

EC.INFO	EC_INFO object returned from Open_SSD_wEC.
obj	output object from SKAT_Null_Model.
...	further arguments to be passed to “iECAT”.
obj.SNPWeight	output object from Read_SNP_WeightFile (default=NULL). If NULL, the beta weight with the “weights.beta” parameter will be used.

Details

Please see iECAT for details.

Value

results	dataframe that contains SetID, p-values (P.value, P.value.Noadj, and P.value.Internal), the number of markers in the SNP sets (N.Marker.All), and the number of markers to test for associations (N.Marker.Test).
P.value.Resampling	currently resampling p-values are not provided.

Author(s)

Seunggeun Lee

iECAT documentation built on May 2, 2019, 8:30 a.m.