Description Usage Arguments Details Value Author(s)
Iteratively carry out association tests with phenotypes and SNP sets in SSD file.
1 2 3 | iECAT.SSD.All(EC.INFO, obj, ..., obj.SNPWeight=NULL)
|
EC.INFO |
EC_INFO object returned from Open_SSD_wEC. |
obj |
output object from SKAT_Null_Model. |
... |
further arguments to be passed to “iECAT”. |
obj.SNPWeight |
output object from Read_SNP_WeightFile (default=NULL). If NULL, the beta weight with the “weights.beta” parameter will be used. |
Please see iECAT for details.
results |
dataframe that contains SetID, p-values (P.value, P.value.Noadj, and P.value.Internal), the number of markers in the SNP sets (N.Marker.All), and the number of markers to test for associations (N.Marker.Test). |
P.value.Resampling |
currently resampling p-values are not provided. |
Seunggeun Lee
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