iRafNet: Integrative Random Forest for Gene Regulatory Network Inference
Version 1.1-1

Provides a flexible integrative algorithm that allows information from prior data, such as protein protein interactions and gene knock-down, to be jointly considered for gene regulatory network inference.

AuthorFrancesca Petralia [aut, cre], Pei Wang [aut], Zhidong Tu [aut], Jialiang Yang [aut], Adele Cutler [ctb], Leo Breiman [ctb], Andy Liaw [ctb], Matthew Wiener [ctb]
Date of publication2016-10-26 10:37:49
MaintainerFrancesca Petralia <francesca.petralia@mssm.edu>
LicenseGPL (>= 2)
Version1.1-1
URL https://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("iRafNet")

Popular man pages

iRafNet: Integrative random forest for gene regulatory network...
iRafNet_network: Compute permutation-based FDR of importance scores and return...
iRafNet_permutation: Derive importance scores for one permuted data.
roc_curve: Plot receiver operating characteristic (ROC) curve for...
Run_permutation: Derive importance scores for M permuted data sets.
See all...

All man pages Function index File listing

Man pages

iRafNet: Integrative random forest for gene regulatory network...
iRafNet_network: Compute permutation-based FDR of importance scores and return...
iRafNet_permutation: Derive importance scores for one permuted data.
roc_curve: Plot receiver operating characteristic (ROC) curve for...
Run_permutation: Derive importance scores for M permuted data sets.

Functions

Files

src
src/rf.h
src/regTree.c
src/regrf.c
src/rfutils.c
NAMESPACE
R
R/iRafNet_permutation.R
R/Run_permutation.R
R/IRafNet_network.R
R/iRafNet.R
R/roc_curve.R
MD5
DESCRIPTION
man
man/iRafNet_network.Rd
man/roc_curve.Rd
man/iRafNet_permutation.Rd
man/Run_permutation.Rd
man/iRafNet.Rd
iRafNet documentation built on May 19, 2017, 7 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.