OTU: Bacterial OTUs.
In iZID: Identify Zero-Inflated Distributions
Description
Usage
Format
Source
Description
A dataset containing the OTUs (Operational Taxonomic Units) of 229 bacteria.
Usage
1
Format
The original data set is a skin microbiome from the National Human Genome Research Institute [1,2], which contains 229 bacterial and
fungal OTUs. The OTU data attached to this package is a data frame with 229 rows and 354 columns, where each row means one kind of bacteria and
each column represents a feature.
The first column x is the name of the bacteria. The rest of columns are the total number of reads for different features.
For example, the second column is the total number of reads for feature 'Center.Back.01', and so forth.
Source
1. K. Findley, J. Oh, J. Yang, S. Conlan, C. Deming, J.A. Meyer, et al (2013). Human skin fungal diversity, Nature, 498:367–70.
2. E.A. Grice, H.H. Kong, S. Conlan, C.B. Deming, J. Davis, A.C. Young, et al (2009). Topographical and temporal diversity of the human skin
microbiome, Science, 324:1190–2.
iZID documentation built on Nov. 6, 2019, 5:08 p.m.
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Description Usage Format Source
Description
A dataset containing the OTUs (Operational Taxonomic Units) of 229 bacteria.
Usage
1 |
Format
The original data set is a skin microbiome from the National Human Genome Research Institute [1,2], which contains 229 bacterial and
fungal OTUs. The OTU data attached to this package is a data frame with 229 rows and 354 columns, where each row means one kind of bacteria and
each column represents a feature.
The first column x is the name of the bacteria. The rest of columns are the total number of reads for different features.
For example, the second column is the total number of reads for feature 'Center.Back.01', and so forth.
Source
1. K. Findley, J. Oh, J. Yang, S. Conlan, C. Deming, J.A. Meyer, et al (2013). Human skin fungal diversity, Nature, 498:367–70.
2. E.A. Grice, H.H. Kong, S. Conlan, C.B. Deming, J. Davis, A.C. Young, et al (2009). Topographical and temporal diversity of the human skin microbiome, Science, 324:1190–2.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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