ibm: Individual Based Models in R
Version 0.1.0

Implementation of some (simple) Individual Based Models and methods to create new ones, particularly for population dynamics models (reproduction, mortality and movement). The basic operations for the simulations are implemented in Rcpp for speed.

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AuthorRicardo Oliveros-Ramos [aut, cre]
Date of publication2016-06-10 08:36:50
MaintainerRicardo Oliveros-Ramos <ricardo.oliveros@gmail.com>
LicenseGPL-2
Version0.1.0
URL http://roliveros-ramos.github.io/ibm
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ibm")

Man pages

boundaries: Spatial boundary restrictions
diffusion: Brownian diffusion of a set of particles
ibm-package: Individual based models in R
localLotkaVolterra: Lotka-Volterra with local predation interactions
mortality: Mortality Process
reproduction: Reproduction Process

Functions

boundaries Man page Source code
boundaries.default Source code
boundaries.list Source code
brownian1D Source code
brownian2D Source code
brownian3D Source code
checkRates Source code
diffusion Man page Source code
diffusion.array Source code
diffusion.list Source code
diffusion.matrix Source code
getMatrix Source code
getVector Source code
ibm Man page
ibm-package Man page
initializePopulation Source code
local.int.cpp Source code
localIntegration Source code
localLotkaVolterra Man page Source code Source code
localPredationInteractions Source code
mirror Source code
mortality Man page Source code
mortality.default Source code
mortality.matrix Source code
plot.ibm.LLV Source code
reproduction Man page Source code
reproduction.default Source code
reproduction.matrix Source code
summary Source code
torus Source code
uniformSquare Source code
updateMatrixSize Source code

Files

src
src/local_int_cpp.cpp
src/local_int_cpp.h
NAMESPACE
R
R/aaa-.R
R/model-localLotkaVolterra.R
R/ibm-main.R
R/ibm-movement.R
R/ibm-mortality.R
R/ibm-predation.R
R/ibm-rcpp.R
R/ibm-auxiliar.R
R/ibm-initialization.R
R/ibm-reproduction.R
README.md
MD5
DESCRIPTION
man
man/reproduction.Rd
man/localLotkaVolterra.Rd
man/diffusion.Rd
man/boundaries.Rd
man/mortality.Rd
man/ibm-package.Rd
ibm documentation built on May 19, 2017, 4:44 p.m.