ibmcraftr: Toolkits to Develop Individual-Based Models in Infectious Disease
Version 1.0.0

It provides a generic set of tools for initializing a synthetic population with each individual in specific disease states, and making transitions between those disease states according to the rates calculated on each timestep. The new version 1.0.0 has C++ code integration to make the functions run faster. It has also a higher level function to actually run the transitions for the number of timesteps that users specify. Additional functions will follow for changing attributes on demographic, health belief and movement.

AuthorSai Thein Than Tun [aut, cre]
Date of publication2016-11-16 10:51:54
MaintainerSai Thein Than Tun <theinthantun.sai@gmail.com>
LicenseMIT + file LICENSE
Version1.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ibmcraftr")

Getting started

README.md

Popular man pages

cumprob: Calculate cumulative probabilities for state transitions.
rate2prob: Miscellaneous functions to support the 'ibmcraftr' packare...
run_state_trans: Run state_trans function over a given number of timesteps.
state_trans: Make state transitions.
stRCPP: Make state transitions using Rcpp.
syn_pop: Create a synthetic population having several states.
See all...

All man pages Function index File listing

Man pages

cumprob: Calculate cumulative probabilities for state transitions.
rate2prob: Miscellaneous functions to support the 'ibmcraftr' packare...
run_state_trans: Run state_trans function over a given number of timesteps.
state_trans: Make state transitions.
stRCPP: Make state transitions using Rcpp.
syn_pop: Create a synthetic population having several states.

Functions

cumprob Man page Source code
onUnload Source code
rate2prob Man page Source code
run_state_trans Man page Source code
stRCPP Man page Source code
stateT Source code
state_trans Man page Source code
syn_pop Man page Source code

Files

src
src/stRCPP.cpp
src/RcppExports.cpp
NAMESPACE
NEWS.md
R
R/state_trans.R
R/syn_pop.R
R/stRCPP.R
R/RcppExports.R
R/cumprob.R
R/run_state_trans.R
R/misc.R
README.md
MD5
DESCRIPTION
man
man/stRCPP.Rd
man/cumprob.Rd
man/state_trans.Rd
man/rate2prob.Rd
man/run_state_trans.Rd
man/syn_pop.Rd
LICENSE
ibmcraftr documentation built on May 19, 2017, 12:39 p.m.

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