ibmcraftr: Toolkits to Develop Individual-Based Models in Infectious Disease

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It provides a generic set of tools for initializing a synthetic population with each individual in specific disease states, and making transitions between those disease states according to the rates calculated on each timestep. The new version 1.0.0 has C++ code integration to make the functions run faster. It has also a higher level function to actually run the transitions for the number of timesteps that users specify. Additional functions will follow for changing attributes on demographic, health belief and movement.

Author
Sai Thein Than Tun [aut, cre]
Date of publication
2016-11-16 10:51:54
Maintainer
Sai Thein Than Tun <theinthantun.sai@gmail.com>
License
MIT + file LICENSE
Version
1.0.0

View on CRAN

Man pages

cumprob
Calculate cumulative probabilities for state transitions.
rate2prob
Miscellaneous functions to support the 'ibmcraftr' packare...
run_state_trans
Run state_trans function over a given number of timesteps.
state_trans
Make state transitions.
stRCPP
Make state transitions using Rcpp.
syn_pop
Create a synthetic population having several states.

Files in this package

ibmcraftr
ibmcraftr/src
ibmcraftr/src/stRCPP.cpp
ibmcraftr/src/RcppExports.cpp
ibmcraftr/NAMESPACE
ibmcraftr/NEWS.md
ibmcraftr/R
ibmcraftr/R/state_trans.R
ibmcraftr/R/syn_pop.R
ibmcraftr/R/stRCPP.R
ibmcraftr/R/RcppExports.R
ibmcraftr/R/cumprob.R
ibmcraftr/R/run_state_trans.R
ibmcraftr/R/misc.R
ibmcraftr/README.md
ibmcraftr/MD5
ibmcraftr/DESCRIPTION
ibmcraftr/man
ibmcraftr/man/stRCPP.Rd
ibmcraftr/man/cumprob.Rd
ibmcraftr/man/state_trans.Rd
ibmcraftr/man/rate2prob.Rd
ibmcraftr/man/run_state_trans.Rd
ibmcraftr/man/syn_pop.Rd
ibmcraftr/LICENSE