uploadStock: Upload New or Updated Fish Stock Assessment Results
In icesSAG: Stock Assessment Graphs Database Web Services

uploadStock

R Documentation

Upload New or Updated Fish Stock Assessment Results

Description

Get summary results of historical stock size, recruitment, and fishing pressure.

Usage

uploadStock(file, upload = FALSE, verbose = FALSE)

Arguments

`file`	the xml file to check and upload
`upload`	should the file be uploaded to the database? Default is FALSE.
`verbose`	if TRUE more verbose messages are reported

Value

The database key of the new / updated stock, or 0 if there was an error.

Author(s)

Colin Millar.

Examples

## Not run: 
info <-
stockInfo(
  StockCode = "whb-comb",
  AssessmentYear = 1996,
  ContactPerson = "its_me@somewhere.gov",
  StockCategory = 3,
  Purpose = "InitAdvice",
  ModelType = "A",
  ModelName = "XSA"
)
fishdata <- stockFishdata(1950:1996)
# simulate some landings for something a bit intesting
set.seed(1232)
fishdata$Landings <- 10^6 * exp(cumsum(cumsum(rnorm(nrow(fishdata), 0, 0.1))))

# You should write out to an xml file and then upload that file
tempfile <- tempfile(fileext = ".xml")
writeSAGxml(info, fishdata, file = tempfile)

# you can check the file is formatted correctly
uploadStock(tempfile, upload = FALSE)

# and if all checks pass, the file can be uploaded
uploadStock(tempfile, upload = TRUE)

## End(Not run)

icesSAG documentation built on June 8, 2025, 10:29 a.m.