taf-reexports: Functions re-exported from the TAF package

In icesTAF: Functions to Support the ICES Transparent Assessment Framework

Functions re-exported from the TAF package

Description

These functions are re-exported from the TAF package.

Usage

makeAll(...)

taf.install(targz = NULL, lib = "boot/library", quiet = FALSE)

parse.repo(repo)

taf2long(x, names = c("Year", "Age", "Value"))

write.taf(x, file = NULL, dir = NULL, quote = FALSE, row.names = FALSE,
  fileEncoding = "UTF-8", underscore = TRUE, ...)

utf8.to.latin1(file, force = FALSE)

download(url, dir = ".", mode = "wb", chmod = file_ext(url) == "",
  destfile = file.path(dir, basename(url)), quiet = TRUE, ...)

clean.boot(force = FALSE)

flr2taf(x, colname = "Value")

get.remote.sha(owner, repo, ref, seven = TRUE)

taf.bootstrap(...)

xtab2taf(x, colname = "Year")

long2taf(x)

source.taf(script, rm = FALSE, clean = TRUE, detach = FALSE,
  taf = NULL, quiet = FALSE)

ds.file(package, author, year, title, version, source)

div(x, cols, by = 1000, grep = FALSE, ...)

detach.packages(quiet = FALSE)

rnd(x, cols, digits = 0, grep = FALSE, ...)

taf2xtab(x)

ds.package(package, author, year, title, version, source)

long2xtab(x)

os.linux()

taf.png(filename, width = 1600, height = 1200, res = 200, ...)

os.macos()

os()

period(x, y = NULL)

tt(x, column = FALSE)

clean.data(folder = "boot/data", quiet = FALSE, force = FALSE)

## S3 method for class 'trellis'
zoom(x, size = 1, main = 1.2 * size, lab = size,
  axis = size, strip = size, sub = 0.9 * size, legend = 0.9 * size,
  splom = 0.9 * size, ...)

zoom(x, ...)

unix2dos(file)

dos2unix(file)

mkdir(path)

convert.spaces(file, sep = "_")

lim(x, mult = 1.1)

is.r.package(targz, spec = NULL, warn = TRUE)

clean.software(folder = "boot/software", quiet = FALSE, force = FALSE)

taf.boot.path(..., fsep = .Platform$file.sep)

sourceAll(...)

plus(x)

taf.sources(type)

msg(...)

process.entry(bib, quiet = FALSE, force = FALSE, clean = FALSE)

taf.data.path(..., fsep = .Platform$file.sep)

download.github(repo, dir = ".", quiet = FALSE)

deps(path = ".", base = FALSE, installed = TRUE, available = TRUE,
  list = FALSE)

taf.session(sort = FALSE, imports = TRUE, details = FALSE)

os.unix()

xtab2long(x, names = c("Year", "Age", "Value"))

os.windows()

draft.data(originator = NULL, year = format(Sys.time(), "%Y"),
  title = NULL, period = NULL, access = "Public", source = NULL,
  file = "", append = FALSE,
  data.files = dir(taf.boot.path("initial/data")),
  data.scripts = dir(boot.dir(), pattern = "\\.R$"))

read.taf(file, check.names = FALSE, stringsAsFactors = FALSE,
  fileEncoding = "UTF-8", ...)

clean(dirs = c("data", model.dir(), "output", "report"), force = FALSE)

model.script()

taf.libPaths(remove = FALSE)

draft.software(package, author = NULL, year = NULL, title = NULL,
  version = NULL, source = NULL, file = "", append = FALSE)

sourceDir(...)

taf.boot(software = TRUE, data = TRUE, clean = TRUE, force = FALSE,
  taf = NULL, quiet = FALSE)

file.encoding(file)

latin1.to.utf8(file, force = FALSE)

clean.library(folder = "boot/library", quiet = FALSE, force = FALSE)

tafpng(...)

sourceTAF(...)

taf2html(x, file = "", align = "", header = align,
  digits = getOption("digits"), center = "style=\"text-align:center\"",
  left = "style=\"text-align:left\"",
  right = "style=\"text-align:right\"", append = FALSE)

source.all(...)

extract.subdir(targz, subtargz, subdir)

taf.library(package, messages = FALSE, warnings = FALSE)

read.bib(file)

boot.exists()

boot.dir()

stamp.description(targz, spec, sha.full)

make.all(...)

make.taf(script, ...)

make(recipe, prereq, target, include = TRUE, engine = source,
  debug = FALSE, force = FALSE, recon = FALSE, ...)

boot.dir.inside(inside = ".")

model.dir()

line.endings(file)

already.in.taf.library(targz, lib)

taf.unzip(zipfile, files = NULL, exdir = ".", unzip = NULL, ...)

process.bibfile(type, clean = TRUE, quiet = FALSE)

cp(from, to, move = FALSE, ignore = FALSE, overwrite = TRUE,
  quiet = TRUE)

makeTAF(...)

rmdir(path, recursive = FALSE)

source.dir(dir, pattern = "\\.[r|R]$", all.files = FALSE,
  recursive = FALSE, quiet = TRUE, ...)

sam2taf(x, colname = NULL, year = TRUE)

taf.skeleton(path = ".", force = FALSE, pkgs = "icesTAF")

Details

Follow the links below to see the documentation. makeAll, taf.install, parse.repo, taf2long, write.taf, utf8.to.latin1, download, clean.boot, flr2taf, get.remote.sha, taf.bootstrap, xtab2taf, long2taf, source.taf, ds.file, div, detach.packages, rnd, taf2xtab, ds.package, long2xtab, os.linux, taf.png, os.macos, os, period, tt, clean.data, zoom.trellis, zoom, unix2dos, dos2unix, mkdir, convert.spaces, lim, is.r.package, clean.software, taf.boot.path, sourceAll, plus, taf.sources, msg, process.entry, taf.data.path, download.github, deps, taf.session, os.unix, xtab2long, os.windows, draft.data, read.taf, clean, model.script, taf.libPaths, draft.software, sourceDir, taf.boot, file.encoding, latin1.to.utf8, clean.library, tafpng, sourceTAF, taf2html, source.all, extract.subdir, taf.library, read.bib, boot.exists, boot.dir, stamp.description, make.all, make.taf, make, boot.dir.inside, model.dir, line.endings, already.in.taf.library, taf.unzip, process.bibfile, cp, makeTAF, rmdir, source.dir, sam2taf

icesTAF documentation built on March 31, 2023, 5:20 p.m.