idendr0: Interactive Dendrograms

Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' (<https://github.com/tsieger/idendro>) to base R graphics and Tcl/Tk GUI.

AuthorTomas Sieger
Date of publication2017-02-22 14:13:11
MaintainerTomas Sieger <tomas.sieger@seznam.cz>
LicenseGPL-2
Version1.5.3
http://github.com/tsieger/idendr0

View on CRAN

Functions

clusterId2SegmentIds Man page
computeLeafColorIdxs Man page
computeLeafOrder Man page
computeMemberIndices Man page
computeSubclusterIndices Man page
createClustersFromLeafColors Man page
cutDendro Man page
dendro2fig Man page
fig2dendro Man page
fig2heatmap Man page
gw2xy Man page
hca5000 Man page
heatmap2fig Man page
idendr0 Man page
idendr0-package Man page
idendro Man page
mySeq Man page
popDendroZoomHistory Man page
popSelectionHistory Man page
prepareDendro Man page
printVar Man page
pushDendroZoomHistory Man page
pushSelectionHistory Man page
selectCluster Man page
smoothHeatmap Man page
smoothHeatmapAccordingToClusters Man page
unselectAllClusters Man page
unselectCurrentCluster Man page
xy2gw Man page

Files

idendr0
idendr0/inst
idendr0/inst/CITATION
idendr0/inst/doc
idendr0/inst/doc/idendro.pdf
idendr0/NAMESPACE
idendr0/demo
idendr0/demo/idendroFlow.R
idendr0/demo/idendroSimple.R
idendr0/demo/idendroWithScatterAndParcoord.R
idendr0/demo/idendroRowCol.R
idendr0/demo/idendroPersistent.R
idendr0/demo/idendroDendSer.R
idendr0/demo/idendroWithGgobi.R
idendr0/demo/idendroChondro.R
idendr0/demo/idendro.R
idendr0/demo/idendroAnnotation.R
idendr0/demo/00Index
idendr0/demo/idendroWithScatter.R
idendr0/demo/idendroAgnesDiana.R
idendr0/demo/idendroBig.R
idendr0/NEWS
idendr0/data
idendr0/data/hca5000.rda
idendr0/R
idendr0/R/heatmap2fig.R idendr0/R/selectCluster.R idendr0/R/createClustersFromLeafColors.R idendr0/R/computeLeafOrder.R idendr0/R/computeMemberIndices.R idendr0/R/computeSubclusterIndices.R idendr0/R/fig2heatmap.R idendr0/R/popSelectionHistory.R idendr0/R/clusterId2SegmentIds.R idendr0/R/idendro.R idendr0/R/pushSelectionHistory.R idendr0/R/idendro-internal.R idendr0/R/pushDendroZoomHistory.R idendr0/R/popDendroZoomHistory.R idendr0/R/prepareDendro.R idendr0/R/xy2gw.R idendr0/R/cutDendro.R idendr0/R/gw2xy.R idendr0/R/fig2dendro.R idendr0/R/smoothHeatmapAccordingToClusters.R idendr0/R/dendro2fig.R idendr0/R/computeLeafColorIdxs.R idendr0/R/unselectAllClusters.R idendr0/R/smoothHeatmap.R idendr0/R/unselectCurrentCluster.R
idendr0/README.md
idendr0/MD5
idendr0/DESCRIPTION
idendr0/man
idendr0/man/idendro.Rd idendr0/man/hca5000.Rd idendr0/man/heatmap2fig.Rd idendr0/man/fig2heatmap.Rd idendr0/man/gw2xy.Rd idendr0/man/createClustersFromLeafColors.Rd idendr0/man/cutDendro.Rd idendr0/man/dendro2fig.Rd idendr0/man/computeLeafOrder.Rd idendr0/man/xy2gw.Rd idendr0/man/smoothHeatmapAccordingToClusters.Rd idendr0/man/smoothHeatmap.Rd idendr0/man/unselectAllClusters.Rd idendr0/man/unselectCurrentCluster.Rd idendr0/man/fig2dendro.Rd idendr0/man/prepareDendro.Rd idendr0/man/popSelectionHistory.Rd idendr0/man/clusterId2SegmentIds.Rd idendr0/man/mySeq.Rd idendr0/man/selectCluster.Rd idendr0/man/pushDendroZoomHistory.Rd idendr0/man/pushSelectionHistory.Rd idendr0/man/computeSubclusterIndices.Rd idendr0/man/computeMemberIndices.Rd idendr0/man/popDendroZoomHistory.Rd idendr0/man/printVar.Rd idendr0/man/computeLeafColorIdxs.Rd idendr0/man/idendr0-package.Rd

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