idendr0: Interactive Dendrograms
Version 1.5.3

Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' () to base R graphics and Tcl/Tk GUI.

AuthorTomas Sieger
Date of publication2017-02-22 14:13:11
MaintainerTomas Sieger <tomas.sieger@seznam.cz>
LicenseGPL-2
Version1.5.3
URL http://github.com/tsieger/idendr0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("idendr0")

Getting started

Package overview
README.md

Popular man pages

computeLeafColorIdxs: computeLeafColorIdxs
fig2heatmap: fig2heatmap
idendr0-package: Interactive Dendrograms
idendro: Interactive Dendrogram
mySeq: mySeq
printVar: printVar
selectCluster: selectCluster
See all...

All man pages Function index File listing

Man pages

clusterId2SegmentIds: clusterId2SegmentIds
computeLeafColorIdxs: computeLeafColorIdxs
computeLeafOrder: computeLeafOrder
computeMemberIndices: computeMemberIndices
computeSubclusterIndices: computeSubclusterIndices
createClustersFromLeafColors: createClustersFromLeafColors
cutDendro: cutDendro
dendro2fig: dendro2fig
fig2dendro: fig2dendro
fig2heatmap: fig2heatmap
gw2xy: gw2xy
hca5000: idendro demo data
heatmap2fig: heatmap2fig
idendr0-package: Interactive Dendrograms
idendro: Interactive Dendrogram
mySeq: mySeq
popDendroZoomHistory: popDendroZoomHistory
popSelectionHistory: popSelectionHistory
prepareDendro: prepareDendro
printVar: printVar
pushDendroZoomHistory: pushDendroZoomHistory
pushSelectionHistory: pushSelectionHistory
selectCluster: selectCluster
smoothHeatmap: smoothHeatmap
smoothHeatmapAccordingToClusters: smoothHeatmapAccordingToClusters
unselectAllClusters: unselectAllClusters
unselectCurrentCluster: unselectCurrentCluster
xy2gw: xy2gw

Functions

clusterId2SegmentIds Man page Source code
computeLeafColorIdxs Man page Source code
computeLeafOrder Man page Source code
computeMemberIndices Man page Source code
computeSubclusterIndices Man page Source code
createClustersFromLeafColors Man page Source code
cutDendro Man page Source code
dendro2fig Man page Source code
fig2dendro Man page Source code
fig2heatmap Man page Source code
findVar Source code
gfc Source code
gw2xy Man page Source code
hca5000 Man page
heatmap2fig Man page Source code
idendr0 Man page
idendr0-package Man page
idendro Man page
mySeq Man page Source code
popDendroZoomHistory Man page Source code
popSelectionHistory Man page Source code
prepareDendro Man page Source code
printVar Man page Source code
pushDendroZoomHistory Man page Source code
pushSelectionHistory Man page Source code
selectCluster Man page Source code
smoothHeatmap Man page Source code
smoothHeatmapAccordingToClusters Man page Source code
unselectAllClusters Man page Source code
unselectCurrentCluster Man page Source code
xy2gw Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/idendro.pdf
NAMESPACE
demo
demo/idendroFlow.R
demo/idendroSimple.R
demo/idendroWithScatterAndParcoord.R
demo/idendroRowCol.R
demo/idendroPersistent.R
demo/idendroDendSer.R
demo/idendroWithGgobi.R
demo/idendroChondro.R
demo/idendro.R
demo/idendroAnnotation.R
demo/00Index
demo/idendroWithScatter.R
demo/idendroAgnesDiana.R
demo/idendroBig.R
NEWS
data
data/hca5000.rda
R
R/heatmap2fig.R
R/selectCluster.R
R/createClustersFromLeafColors.R
R/computeLeafOrder.R
R/computeMemberIndices.R
R/computeSubclusterIndices.R
R/fig2heatmap.R
R/popSelectionHistory.R
R/clusterId2SegmentIds.R
R/idendro.R
R/pushSelectionHistory.R
R/idendro-internal.R
R/pushDendroZoomHistory.R
R/popDendroZoomHistory.R
R/prepareDendro.R
R/xy2gw.R
R/cutDendro.R
R/gw2xy.R
R/fig2dendro.R
R/smoothHeatmapAccordingToClusters.R
R/dendro2fig.R
R/computeLeafColorIdxs.R
R/unselectAllClusters.R
R/smoothHeatmap.R
R/unselectCurrentCluster.R
README.md
MD5
DESCRIPTION
man
man/idendro.Rd
man/hca5000.Rd
man/heatmap2fig.Rd
man/fig2heatmap.Rd
man/gw2xy.Rd
man/createClustersFromLeafColors.Rd
man/cutDendro.Rd
man/dendro2fig.Rd
man/computeLeafOrder.Rd
man/xy2gw.Rd
man/smoothHeatmapAccordingToClusters.Rd
man/smoothHeatmap.Rd
man/unselectAllClusters.Rd
man/unselectCurrentCluster.Rd
man/fig2dendro.Rd
man/prepareDendro.Rd
man/popSelectionHistory.Rd
man/clusterId2SegmentIds.Rd
man/mySeq.Rd
man/selectCluster.Rd
man/pushDendroZoomHistory.Rd
man/pushSelectionHistory.Rd
man/computeSubclusterIndices.Rd
man/computeMemberIndices.Rd
man/popDendroZoomHistory.Rd
man/printVar.Rd
man/computeLeafColorIdxs.Rd
man/idendr0-package.Rd
idendr0 documentation built on May 19, 2017, 4:09 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.