idendr0: Interactive Dendrograms

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Interactive dendrogram that enables the user to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in 'GGobi' interactive plots and user-supplied plots. This is a backport of Qt-based 'idendro' (https://github.com/tsieger/idendro) to base R graphics and Tcl/Tk GUI.

Author
Tomas Sieger
Date of publication
2015-10-16 20:30:35
Maintainer
Tomas Sieger <tomas.sieger@seznam.cz>
License
GPL-2
Version
1.5.2
URLs

View on CRAN

Man pages

clusterId2SegmentIds
clusterId2SegmentIds
computeLeafColorIdxs
computeLeafColorIdxs
computeLeafOrder
computeLeafOrder
computeMemberIndices
computeMemberIndices
computeSubclusterIndices
computeSubclusterIndices
createClustersFromLeafColors
createClustersFromLeafColors
cutDendro
cutDendro
dendro2fig
dendro2fig
fig2dendro
fig2dendro
fig2heatmap
fig2heatmap
gw2xy
gw2xy
hca5000
idendro demo data
heatmap2fig
heatmap2fig
idendr0-package
Interactive Dendrograms
idendro
Interactive Dendrogram
mySeq
mySeq
popDendroZoomHistory
popDendroZoomHistory
popSelectionHistory
popSelectionHistory
prepareDendro
prepareDendro
printVar
printVar
pushDendroZoomHistory
pushDendroZoomHistory
pushSelectionHistory
pushSelectionHistory
selectCluster
selectCluster
smoothHeatmap
smoothHeatmap
smoothHeatmapAccordingToClusters
smoothHeatmapAccordingToClusters
unselectAllClusters
unselectAllClusters
unselectCurrentCluster
unselectCurrentCluster
xy2gw
xy2gw

Files in this package

idendr0
idendr0/NAMESPACE
idendr0/demo
idendr0/demo/idendroFlow.R
idendr0/demo/idendroSimple.R
idendr0/demo/idendroWithScatterAndParcoord.R
idendr0/demo/idendroRowCol.R
idendr0/demo/idendroPersistent.R
idendr0/demo/idendroDendSer.R
idendr0/demo/idendroWithGgobi.R
idendr0/demo/idendroChondro.R
idendr0/demo/idendro.R
idendr0/demo/idendroAnnotation.R
idendr0/demo/00Index
idendr0/demo/idendroWithScatter.R
idendr0/demo/idendroAgnesDiana.R
idendr0/demo/idendroBig.R
idendr0/NEWS
idendr0/data
idendr0/data/hca5000.rda
idendr0/R
idendr0/R/heatmap2fig.R
idendr0/R/selectCluster.R
idendr0/R/createClustersFromLeafColors.R
idendr0/R/computeLeafOrder.R
idendr0/R/computeMemberIndices.R
idendr0/R/computeSubclusterIndices.R
idendr0/R/fig2heatmap.R
idendr0/R/popSelectionHistory.R
idendr0/R/clusterId2SegmentIds.R
idendr0/R/idendro.R
idendr0/R/pushSelectionHistory.R
idendr0/R/idendro-internal.R
idendr0/R/pushDendroZoomHistory.R
idendr0/R/popDendroZoomHistory.R
idendr0/R/prepareDendro.R
idendr0/R/xy2gw.R
idendr0/R/cutDendro.R
idendr0/R/gw2xy.R
idendr0/R/fig2dendro.R
idendr0/R/smoothHeatmapAccordingToClusters.R
idendr0/R/dendro2fig.R
idendr0/R/computeLeafColorIdxs.R
idendr0/R/unselectAllClusters.R
idendr0/R/smoothHeatmap.R
idendr0/R/unselectCurrentCluster.R
idendr0/README.md
idendr0/MD5
idendr0/DESCRIPTION
idendr0/man
idendr0/man/idendro.Rd
idendr0/man/hca5000.Rd
idendr0/man/heatmap2fig.Rd
idendr0/man/fig2heatmap.Rd
idendr0/man/gw2xy.Rd
idendr0/man/createClustersFromLeafColors.Rd
idendr0/man/cutDendro.Rd
idendr0/man/dendro2fig.Rd
idendr0/man/computeLeafOrder.Rd
idendr0/man/xy2gw.Rd
idendr0/man/smoothHeatmapAccordingToClusters.Rd
idendr0/man/smoothHeatmap.Rd
idendr0/man/unselectAllClusters.Rd
idendr0/man/unselectCurrentCluster.Rd
idendr0/man/fig2dendro.Rd
idendr0/man/prepareDendro.Rd
idendr0/man/popSelectionHistory.Rd
idendr0/man/clusterId2SegmentIds.Rd
idendr0/man/mySeq.Rd
idendr0/man/selectCluster.Rd
idendr0/man/pushDendroZoomHistory.Rd
idendr0/man/pushSelectionHistory.Rd
idendr0/man/computeSubclusterIndices.Rd
idendr0/man/computeMemberIndices.Rd
idendr0/man/popDendroZoomHistory.Rd
idendr0/man/printVar.Rd
idendr0/man/computeLeafColorIdxs.Rd
idendr0/man/idendr0-package.Rd