imageData: Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer
Version 0.1-26

Extracts traits from imaging data produced using a Lemna-Tec Scananalyzer (see for more information). Growth rates between successive imagings are obtained and those for a nominated set of intervals can also be calculated. Profile or longitudinal plots of the traits and growth rates can be produced. These allow one to check for anomalous data and to explore growth patterns in the data.

AuthorChris Brien <Chris.Brien@unisa.edu.au>.
Date of publication2016-10-06 19:49:57
MaintainerChris Brien <Chris.Brien@unisa.edu.au>
LicenseGPL (>= 2)
Version0.1-26
URL http://chris.brien.name
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("imageData")

Popular man pages

anomPlot: Identifies anomalous individuals and produces longitudinal...
corrPlot: Calculates and plots correlation matrices for a set of...
GrowthRates: Calculates growth rates (AGR, PGR, RGRdiff) between pairs of...
imageData-pkg: Aids in Processing and Plotting Data from a Lemna-Tec...
longitudinalPrime: Selects a set variables to be retained in a data frame of...
splitSplines: Adds the fits after fitting a natural cubic smoothing spline...
WUI: Calculates the Water Use Index (WUI)
See all...

All man pages Function index File listing

Man pages

anom: Tests if any values in a vector are anomalous in being...
anomPlot: Identifies anomalous individuals and produces longitudinal...
calcLagged: Replaces the values in a vector with the result of applying...
calcTimes: Calculates for a set of times, the time intervals after an...
corrPlot: Calculates and plots correlation matrices for a set of...
cumulate: Calculates the cumulative sum, ignoring the first element if...
designFactors: Adds the factors and covariates for a blocked, split-plot...
exampleData: A small data set to use in function examples
fitSpline: Produce the fits from a natural cubic smoothing spline...
getDates: Forms a subset of 'responses' in 'data' that contains their...
GrowthRates: Calculates growth rates (AGR, PGR, RGRdiff) between pairs of...
imageData-pkg: Aids in Processing and Plotting Data from a Lemna-Tec...
imagetimesPlot: Plots the position of a time within an interval against the...
importExcel: Imports an Excel imaging file and allows some renaming of...
intervalGRaverage: Calculates the growth rates for a specified time interval by...
intervalGRdiff: Calculates the growth rates for a specified time interval
intervalPVA: Selects a subset of variables observed within a specified...
intervalValueCalculate: Calculates a single value that is a function of an...
intervalWUI: Calculates water use indices (WUI) over a specified time...
longiPlot: Plots longitudinal data from a Lemna Tec Scananalyzer
longitudinalPrime: Selects a set variables to be retained in a data frame of...
probeDF: Compares, for a set of specified values of df, a response and...
PVA: Selects a subset of variables using Principal Variable...
rcontrib: Computes a measure of how correlated each variable in a set...
RiceRaw.dat: Data for an experiment to investigate a rice germplasm panel
splitContGRdiff: Adds the growth rates calculated continuously over time for...
splitSplines: Adds the fits after fitting a natural cubic smoothing spline...
splitValueCalculate: Calculates a single value that is a function of an...
twoLevelOpcreate: Creates a data.frame formed by applying, for each response, a...
WUI: Calculates the Water Use Index (WUI)

Functions

AGRdiff Man page
GrowthRates Man page
PGR Man page
PVA Man page
RGRdiff Man page
RiceRaw.dat Man page
WUI Man page
anom Man page
anomPlot Man page
calcLagged Man page
calcTimes Man page
cart.dat Man page
corrPlot Man page
cumulate Man page
designFactors Man page
exampleData Man page
fitSpline Man page
getDates Man page
imageData Man page
imageData-pkg Man page
imagetimesPlot Man page
importExcel Man page
intervalGRaverage Man page
intervalGRdiff Man page
intervalPVA Man page
intervalValueCalculate Man page
intervalWUI Man page
longi.dat Man page
longi.prime.dat Man page
longiPlot Man page
longitudinalPrime Man page
probeDF Man page
raw.dat Man page
rcontrib Man page
splitContGRdiff Man page
splitSplines Man page
splitValueCalculate Man page
twoLevelOpcreate Man page

Files

inst
inst/NEWS.Rd
inst/doc
inst/doc/imageData-manual.pdf
NAMESPACE
data
data/exampleData.rda
data/RiceRaw.dat.rda
R
R/data.2LevOp.v1.r
R/PVA.r
R/data.cart.v1.r
R/data.longi.v5.r
MD5
build
build/partial.rdb
DESCRIPTION
man
man/rcontrib.Rd
man/exampleData.Rd
man/GrowthRates.Rd
man/splitValueCalculate.Rd
man/intervalGRdiff.Rd
man/intervalValueCalculate.Rd
man/imageData-pkg.Rd
man/imagetimesPlot.Rd
man/importExcel.Rd
man/calcTimes.Rd
man/intervalGRaverage.Rd
man/calcLagged.Rd
man/corrPlot.Rd
man/intervalPVA.Rd
man/probeDF.Rd
man/fitSpline.Rd
man/splitSplines.Rd
man/cumulate.Rd
man/PVA.Rd
man/WUI.Rd
man/anom.Rd
man/longitudinalPrime.Rd
man/designFactors.Rd
man/getDates.Rd
man/twoLevelOpcreate.Rd
man/splitContGRdiff.Rd
man/anomPlot.Rd
man/longiPlot.Rd
man/RiceRaw.dat.Rd
man/intervalWUI.Rd
imageData documentation built on May 19, 2017, 7:47 p.m.

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