imageData: Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer

Extracts traits from imaging data produced using a Lemna-Tec Scananalyzer (see <http://www.lemnatec.com/products/hardware-solutions/scanalyzer-3d> for more information). Growth rates between successive imagings are obtained and those for a nominated set of intervals can also be calculated. Profile or longitudinal plots of the traits and growth rates can be produced. These allow one to check for anomalous data and to explore growth patterns in the data.

Author
Chris Brien <Chris.Brien@unisa.edu.au>.
Date of publication
2016-10-06 19:49:57
Maintainer
Chris Brien <Chris.Brien@unisa.edu.au>
License
GPL (>= 2)
Version
0.1-26
URLs

View on CRAN

Man pages

anom
Tests if any values in a vector are anomalous in being...
anomPlot
Identifies anomalous individuals and produces longitudinal...
calcLagged
Replaces the values in a vector with the result of applying...
calcTimes
Calculates for a set of times, the time intervals after an...
corrPlot
Calculates and plots correlation matrices for a set of...
cumulate
Calculates the cumulative sum, ignoring the first element if...
designFactors
Adds the factors and covariates for a blocked, split-plot...
exampleData
A small data set to use in function examples
fitSpline
Produce the fits from a natural cubic smoothing spline...
getDates
Forms a subset of 'responses' in 'data' that contains their...
GrowthRates
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of...
imageData-pkg
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("imageData")}
imagetimesPlot
Plots the position of a time within an interval against the...
importExcel
Imports an Excel imaging file and allows some renaming of...
intervalGRaverage
Calculates the growth rates for a specified time interval by...
intervalGRdiff
Calculates the growth rates for a specified time interval
intervalPVA
Selects a subset of variables observed within a specified...
intervalValueCalculate
Calculates a single value that is a function of an...
intervalWUI
Calculates water use indices (WUI) over a specified time...
longiPlot
Plots longitudinal data from a Lemna Tec Scananalyzer
longitudinalPrime
Selects a set variables to be retained in a data frame of...
probeDF
Compares, for a set of specified values of df, a response and...
PVA
Selects a subset of variables using Principal Variable...
rcontrib
Computes a measure of how correlated each variable in a set...
RiceRaw.dat
Data for an experiment to investigate a rice germplasm panel
splitContGRdiff
Adds the growth rates calculated continuously over time for...
splitSplines
Adds the fits after fitting a natural cubic smoothing spline...
splitValueCalculate
Calculates a single value that is a function of an...
twoLevelOpcreate
Creates a data.frame formed by applying, for each response, a...
WUI
Calculates the Water Use Index (WUI)

Files in this package

imageData
imageData/inst
imageData/inst/NEWS.Rd
imageData/inst/doc
imageData/inst/doc/imageData-manual.pdf
imageData/NAMESPACE
imageData/data
imageData/data/exampleData.rda
imageData/data/RiceRaw.dat.rda
imageData/R
imageData/R/data.2LevOp.v1.r
imageData/R/PVA.r
imageData/R/data.cart.v1.r
imageData/R/data.longi.v5.r
imageData/MD5
imageData/build
imageData/build/partial.rdb
imageData/DESCRIPTION
imageData/man
imageData/man/rcontrib.Rd
imageData/man/exampleData.Rd
imageData/man/GrowthRates.Rd
imageData/man/splitValueCalculate.Rd
imageData/man/intervalGRdiff.Rd
imageData/man/intervalValueCalculate.Rd
imageData/man/imageData-pkg.Rd
imageData/man/imagetimesPlot.Rd
imageData/man/importExcel.Rd
imageData/man/calcTimes.Rd
imageData/man/intervalGRaverage.Rd
imageData/man/calcLagged.Rd
imageData/man/corrPlot.Rd
imageData/man/intervalPVA.Rd
imageData/man/probeDF.Rd
imageData/man/fitSpline.Rd
imageData/man/splitSplines.Rd
imageData/man/cumulate.Rd
imageData/man/PVA.Rd
imageData/man/WUI.Rd
imageData/man/anom.Rd
imageData/man/longitudinalPrime.Rd
imageData/man/designFactors.Rd
imageData/man/getDates.Rd
imageData/man/twoLevelOpcreate.Rd
imageData/man/splitContGRdiff.Rd
imageData/man/anomPlot.Rd
imageData/man/longiPlot.Rd
imageData/man/RiceRaw.dat.Rd
imageData/man/intervalWUI.Rd