Files in ingres
Infer Gene Probabilistic Boolean Networks from Single-Cell Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/netwokHelpers.R
R/ingresClass.R
R/plotting.R
R/computePbn.R
R/utils-pipe.R
R/ingres-package.R
R/plotSelectedCell.R
R/data.R
R/performViper.R
R/setup.R
R/produceNetwork.R
inst/CITATION
inst/doc/ingres.html
inst/doc/ingres.R
inst/doc/ingres.Rmd
inst/extdata/example_network.graphml
inst/extdata/example_ginsim.zginml
build/vignette.rds
tests/testthat.R
tests/testthat/test-plotting.R
tests/testthat/test-netwokHelpers.R
tests/testthat/helper.R
tests/testthat/test-ingres-class.R
tests/testthat/test-computePbn.R
tests/testthat/helper-snapshot_files.R
tests/testthat/test-performViper.R
tests/testthat/_snaps/performViper.md
tests/testthat/_snaps/netwokHelpers.md
tests/testthat/_snaps/netwokHelpers/snapshot.graphml
tests/testthat/_snaps/netwokHelpers/networkGenes.csv
tests/testthat/_snaps/plotting/cellGenesHeatmapSnap.png
tests/testthat/_snaps/plotting/cellPbnPlotSnap.png
tests/testthat/_snaps/plotting/clusterGenesHeatmapSnap.png
tests/testthat/_snaps/plotting/clusterPbnPlotSnap.png
vignettes/nature.csl
vignettes/vignette.bib
vignettes/ingres.Rmd
data/viper_results.rda
data/network.rda
data/small_blca_wang.rda
data/network_genes.rda
man/createNetworkGenesTemplate.Rd
man/computePbnByCluster.Rd
man/createIngresObjectFromSeurat.Rd
man/clusterPbnPlot.Rd
man/produceNetworkForCluster.Rd
man/ingres-class.Rd
man/clusterGenesHeatmap.Rd
man/ginmlToGraphml.Rd
man/createIngresObject.Rd
man/produceBoolnetNetwork.Rd
man/plotSelectedCell.Rd
man/network_genes.Rd
man/pipe.Rd
man/produceNetworkForCell.Rd
man/performViper.Rd
man/ingres-package.Rd
man/cellGenesHeatmap.Rd
man/printAllNodes.Rd
man/small_blca_wang.Rd
man/viper_results.Rd
man/cellPbnPlot.Rd
man/graphmlAsTidy.Rd
man/network.Rd
