Man pages for ingres
Infer Gene Probabilistic Boolean Networks from Single-Cell Data
| cellGenesHeatmap | Plot a cell heatmap |
| cellPbnPlot | Plot a cell PBN |
| clusterGenesHeatmap | Plot a cluster heatmap |
| clusterPbnPlot | Plot a cluster PBN |
| computePbnByCluster | Compute a Probabilistic Boolean Network (PBN) for each... |
| createIngresObject | Create a new 'ingres' object. |
| createIngresObjectFromSeurat | Create a new 'ingres' object using the expression data in a... |
| createNetworkGenesTemplate | Create a network genes data frame. Optionally store it as csv... |
| ginmlToGraphml | Convert a GinSim file into a GraphML file GinSim files have... |
| graphmlAsTidy | Convert GraphML format to tidygraph |
| ingres-class | The ingres class. |
| ingres-package | ingres: Infer Gene Probabilistic Boolean Networks from... |
| network | An example network, in the format required by the package.... |
| network_genes | An example dataframe with the genes contained in the network,... |
| performViper | Perform VIPER |
| pipe | Pipe operator |
| plotSelectedCell | Plot the PBN of a cell selected in an interactive plot. |
| printAllNodes | Print all nodes in a network For testing and checks purposes. |
| produceBoolnetNetwork | Convert an ingres network into a BoolNet one |
| produceNetworkForCell | Produce a tidygraph network for a given cell |
| produceNetworkForCluster | Produce a tidygraph network for a given cluster |
| small_blca_wang | An example small Seurat object, using dataset GSE130001 from... |
| viper_results | The results of running 'performViper()' on an ingres object... |
