interventionalDBN: Interventional Inference for Dynamic Bayesian Networks

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This package allows a dynamic Bayesian network to be inferred from microarray timecourse data with interventions (inhibitors).

Author
Simon Spencer
Date of publication
2014-05-30 16:19:24
Maintainer
Simon Spencer <s.e.f.spencer@warwick.ac.uk>
License
GPL (>= 2)
Version
1.2.2

View on CRAN

Man pages

countGraphs
Count the number of possible parents
formatData
Format a microarray spreadsheet ready for interventional...
interventionalData
Simulated micro-array timecourse data speadsheet.
interventionalDBN-package
Interventional Inference for Dynamic Bayesian Networks
interventionalInference
Dynamic Bayesian Network inference with interventions.
interventionalInferenceAdvanced
Dynamic Bayesian Network inference with interventions.
interventionEffects
Calculate interventional effects
linesROC
Add an ROC curve to an existing plot.
nxt
Produces the next set of parents from an existing set of...
plotMaxML
Plot the performance of maximum marginal likelihood...
trueMatrix
The true edge matrix used to generate 'interventionalData'.
warshall
Find the largest edge probability threshold that connects a...

Files in this package

interventionalDBN
interventionalDBN/NAMESPACE
interventionalDBN/data
interventionalDBN/data/trueMatrix.rda
interventionalDBN/data/interventionalData.rda
interventionalDBN/R
interventionalDBN/R/interventionEffects.R
interventionalDBN/R/countGraphs.R
interventionalDBN/R/nxt.R
interventionalDBN/R/interventionalInference.R
interventionalDBN/R/warshall.R
interventionalDBN/R/formatData.R
interventionalDBN/R/interventionalInferenceAdvanced.R
interventionalDBN/R/linesROC.R
interventionalDBN/R/plotMaxML.R
interventionalDBN/MD5
interventionalDBN/DESCRIPTION
interventionalDBN/man
interventionalDBN/man/trueMatrix.Rd
interventionalDBN/man/interventionalDBN-package.Rd
interventionalDBN/man/plotMaxML.Rd
interventionalDBN/man/warshall.Rd
interventionalDBN/man/interventionEffects.Rd
interventionalDBN/man/formatData.Rd
interventionalDBN/man/countGraphs.Rd
interventionalDBN/man/interventionalData.Rd
interventionalDBN/man/linesROC.Rd
interventionalDBN/man/interventionalInference.Rd
interventionalDBN/man/interventionalInferenceAdvanced.Rd
interventionalDBN/man/nxt.Rd