simData4cure: Simulate Data from Cox Cure Model with Uncertain Event Status

In intsurv: Integrative Survival Modeling

Description

Simulate Data from Cox Cure Model with Uncertain Event Status

Usage

simData4cure(
  nSubject = 1000,
  shape = 2,
  scale = 0.1,
  lambda_censor = 1,
  max_censor = Inf,
  p1 = 0.9,
  p2 = 0.9,
  p3 = 0.9,
  survMat,
  cureMat = survMat,
  b0 = stats::binomial()$linkfun(0.7),
  survCoef = rep(1, ncol(survMat)),
  cureCoef = rep(1, ncol(cureMat)),
  ...
)

Arguments

nSubject	A positive integer specifying number of subjects.
shape	A positive number specifying the shape parameter of the distribution of the event times.
scale	A positive number specifying the scale parameter of the distribution of the event times.
lambda_censor	A positive number specifying the rate parameter of the exponential distribution for generating censoring times.
max_censor	A positive number specifying the largest censoring time.
p1	A number between 0 and 1 specifying the probability of simulating events with observed event indicators given the simulated event times.
p2	A number between 0 and 1 specifying the probability of simulating susceptible censoring times with observed event status given the simulated susceptible censoring times.
p3	A number between 0 and 1 specifying the probability of simulating cured censoring times with observed event status given the simulated cured censoring times.
survMat	A numeric matrix representing the design matrix of the survival model part.
cureMat	A numeric matrix representing the design matrix excluding intercept of the cure rate model part.
b0	A number representing the intercept term for the cure rate model part.
survCoef	A numeric vector for the covariate coefficients of the survival model part.
cureCoef	A numeric vector for the covariate coefficients of the cure model part.
...	Other arguments not used currently.

Value

A data.frame with the following columns:

• obs_time: Observed event/survival times.

• obs_event: Observed event status.

• event_time: Underlying true event times.

• censor_time: underlying true censoring times.

• oracle_event: underlying true event indicators.

• oracle_cure: underlying true cure indicators.

• case: underlying true case labels.

References

Wang, W., Luo, C., Aseltine, R. H., Wang, F., Yan, J., & Chen, K. (2020). Suicide Risk Modeling with Uncertain Diagnostic Records. arXiv preprint arXiv:2009.02597.

Examples

## see examples of function cox_cure

intsurv documentation built on Jan. 13, 2021, 3:46 p.m.