# ipflasso: Integrative Lasso with Penalty Factors

The core of the package is cvr2.ipflasso(), an extension of glmnet to be used when the (large) set of available predictors is partitioned into several modalities which potentially differ with respect to their information content in terms of prediction. For example, in biomedical applications patient outcome such as survival time or response to therapy may have to be predicted based on, say, mRNA data, miRNA data, methylation data, CNV data, clinical data, etc. The clinical predictors are on average often much more important for outcome prediction than the mRNA data. The ipflasso method takes this problem into account by using different penalty parameters for predictors from different modalities. The ratio between the different penalty parameters can be chosen by cross-validation.

- Author
- Anne-Laure Boulesteix, Mathias Fuchs
- Date of publication
- 2015-11-24 15:16:28
- Maintainer
- Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>
- License
- GPL
- Version
- 0.1

## Man pages

- cvr2.ipflasso
- Cross-validated integrative lasso with cross-validated...
- cvr2.ipflasso
- Cross-validated integrative lasso with cross-validated...
- cvr.glmnet
- Repeating cv.glmnet
- cvr.glmnet
- Repeating cv.glmnet
- cvr.ipflasso
- Cross-validated integrative lasso with fixed penalty factors
- cvr.ipflasso
- Cross-validated integrative lasso with fixed penalty factors
- ipflasso.predict
- Using an IPF-lasso model for prediction of new observations
- ipflasso.predict
- Using an IPF-lasso model for prediction of new observations
- my.auc
- Area under the curve (AUC)
- my.auc
- Area under the curve (AUC)

## Files in this package

ipflasso |

ipflasso/NAMESPACE |

ipflasso/R |

ipflasso/R/cvr.ipflasso.r |

ipflasso/R/ipflasso.predict.r |

ipflasso/R/my.auc.R |

ipflasso/R/cvr.glmnet.R |

ipflasso/R/cvr2.ipflasso.r |

ipflasso/MD5 |

ipflasso/DESCRIPTION |

ipflasso/man |

ipflasso/man/cvr2.ipflasso.Rd |

ipflasso/man/ipflasso.predict.Rd |

ipflasso/man/cvr.ipflasso.Rd |

ipflasso/man/my.auc.Rd |

ipflasso/man/cvr.glmnet.Rd |