Genotype: Codify Specimens' Genotypes.
In isqg: In Silico Quantitative Genetics
genotype R Documentation
Codify Specimens' Genotypes.
Description
Codify Specimens' genotypes instances as numeric codes [-1/0/1]
or as character vector that keeps the phase information.
Usage
genotype(pop, phase = FALSE)
Arguments
pop
a list with instances of the R6 class Specimen.
phase
logical should the codes keep the phase.
Value
A numeric or character matrix with the codified Specimens' genotypes.
Examples
data(ToyMap)
spc <- set_specie(ToyMap)
Aa <- founder(spc, "Aa")
aA <- spc$founder("aA")
Both <- list(Aa = Aa, aA = aA)
## different ways
genotype(Both) # as numeric
genotype(Both, phase = TRUE) # as character
isqg documentation built on Oct. 18, 2022, 9:07 a.m.
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| genotype | R Documentation |
Codify Specimens' Genotypes.
Description
Codify Specimens' genotypes instances as numeric codes [-1/0/1] or as character vector that keeps the phase information.
Usage
genotype(pop, phase = FALSE)
Arguments
pop |
a list with instances of the R6 class Specimen. |
phase |
logical should the codes keep the phase. |
Value
A numeric or character matrix with the codified Specimens' genotypes.
Examples
data(ToyMap)
spc <- set_specie(ToyMap)
Aa <- founder(spc, "Aa")
aA <- spc$founder("aA")
Both <- list(Aa = Aa, aA = aA)
## different ways
genotype(Both) # as numeric
genotype(Both, phase = TRUE) # as character
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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