iteRates: Parametric rate comparison

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Iterates through a phylogenetic tree to identify regions of rate variation using the parametric rate comparison test.

Author
Premal Shah, Benjamin Fitzpatrick, James Fordyce
Date of publication
2013-05-03 21:40:36
Maintainer
Ben Fitzpatrick <benfitz@utk.edu>
License
GPL (>= 3)
Version
3.1

View on CRAN

Man pages

color.tree.plot
color.tree.plot
comp.fit.subs
comp.fit.subs
comp.subs
comp.subs
tree.rand.test
tree.rand.test

Files in this package

iteRates
iteRates/R
iteRates/R/tt.Summary.R
iteRates/R/trimTree.R
iteRates/R/treeSims.R
iteRates/R/tree.rand.test.R
iteRates/R/tree.na.Count.R
iteRates/R/tab.table.R
iteRates/R/tab.summary.R
iteRates/R/SumSetUpGroupMatrix.R
iteRates/R/subtreez.R
iteRates/R/subtrees2.6.R
iteRates/R/SetUpGroupMatrix.R
iteRates/R/RemRedun.R
iteRates/R/remainingTax.R
iteRates/R/Qcomp.subs.R
iteRates/R/PosGroups.R
iteRates/R/posClusters.R
iteRates/R/plot.phylo2.R
iteRates/R/phylogram.plot2.R
iteRates/R/Null.comp.subs.ef.R
iteRates/R/node.sons.R
iteRates/R/model.sel.distbn.R
iteRates/R/min.weib.R
iteRates/R/min.vrat.R
iteRates/R/min.lnorm.R
iteRates/R/mergelist.R
iteRates/R/internds.R
iteRates/R/id.subtrees.R
iteRates/R/GroupsAsText.R
iteRates/R/FP.comp.subs.R
iteRates/R/edgelabels2.R
iteRates/R/drop.tip2.6.R
iteRates/R/compareSubTrees.R
iteRates/R/CompareSubTrees.k.R
iteRates/R/comp.subs.R
iteRates/R/comp.subs.DF.R
iteRates/R/comp.fit.subs.R
iteRates/R/comBim.R
iteRates/R/color.tree.plot.R
iteRates/R/class.edge.all.R
iteRates/R/censor.weib.x.R
iteRates/R/censor.vrat.x.R
iteRates/R/censor.lnorm.x.R
iteRates/R/censor.exp.x.R
iteRates/R/calcClus.R
iteRates/R/calc.rate.weib.R
iteRates/R/calc.rate.vrat.R
iteRates/R/calc.rate.lnorm.R
iteRates/R/BOTHlabels2.R
iteRates/R/birthdeath.tree.geiger1.3.1.R
iteRates/NAMESPACE
iteRates/MD5
iteRates/man
iteRates/man/trimtree.rd
iteRates/man/tree.rand.test.Rd
iteRates/man/tree.na.count.rd
iteRates/man/tab.summary.rd
iteRates/man/iterates-package.rd
iteRates/man/id.subtrees.rd
iteRates/man/fp.comp.subs.rd
iteRates/man/comp.subs.Rd
iteRates/man/comp.fit.subs.Rd
iteRates/man/color.tree.plot.Rd
iteRates/DESCRIPTION