iteRates: Parametric rate comparison

Iterates through a phylogenetic tree to identify regions of rate variation using the parametric rate comparison test.

AuthorPremal Shah, Benjamin Fitzpatrick, James Fordyce
Date of publication2013-05-03 21:40:36
MaintainerBen Fitzpatrick <benfitz@utk.edu>
LicenseGPL (>= 3)
Version3.1

View on CRAN

Files

iteRates
iteRates/R
iteRates/R/tt.Summary.R iteRates/R/trimTree.R iteRates/R/treeSims.R iteRates/R/tree.rand.test.R iteRates/R/tree.na.Count.R iteRates/R/tab.table.R iteRates/R/tab.summary.R iteRates/R/SumSetUpGroupMatrix.R iteRates/R/subtreez.R iteRates/R/subtrees2.6.R iteRates/R/SetUpGroupMatrix.R iteRates/R/RemRedun.R iteRates/R/remainingTax.R iteRates/R/Qcomp.subs.R iteRates/R/PosGroups.R iteRates/R/posClusters.R iteRates/R/plot.phylo2.R iteRates/R/phylogram.plot2.R iteRates/R/Null.comp.subs.ef.R iteRates/R/node.sons.R iteRates/R/model.sel.distbn.R iteRates/R/min.weib.R iteRates/R/min.vrat.R iteRates/R/min.lnorm.R iteRates/R/mergelist.R iteRates/R/internds.R iteRates/R/id.subtrees.R iteRates/R/GroupsAsText.R iteRates/R/FP.comp.subs.R iteRates/R/edgelabels2.R iteRates/R/drop.tip2.6.R iteRates/R/compareSubTrees.R iteRates/R/CompareSubTrees.k.R iteRates/R/comp.subs.R iteRates/R/comp.subs.DF.R iteRates/R/comp.fit.subs.R iteRates/R/comBim.R iteRates/R/color.tree.plot.R iteRates/R/class.edge.all.R iteRates/R/censor.weib.x.R iteRates/R/censor.vrat.x.R iteRates/R/censor.lnorm.x.R iteRates/R/censor.exp.x.R iteRates/R/calcClus.R iteRates/R/calc.rate.weib.R iteRates/R/calc.rate.vrat.R iteRates/R/calc.rate.lnorm.R iteRates/R/BOTHlabels2.R iteRates/R/birthdeath.tree.geiger1.3.1.R
iteRates/NAMESPACE
iteRates/MD5
iteRates/man
iteRates/man/trimtree.rd
iteRates/man/tree.rand.test.Rd
iteRates/man/tree.na.count.rd
iteRates/man/tab.summary.rd
iteRates/man/iterates-package.rd
iteRates/man/id.subtrees.rd
iteRates/man/fp.comp.subs.rd
iteRates/man/comp.subs.Rd iteRates/man/comp.fit.subs.Rd iteRates/man/color.tree.plot.Rd
iteRates/DESCRIPTION

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