jaatha: Simulation-Based Maximum Likelihood Parameter Estimation

An estimation method that can use computer simulations to approximate maximum-likelihood estimates even when the likelihood function can not be evaluated directly. It can be applied whenever it is feasible to conduct many simulations, but works best when the data is approximately Poisson distributed. It was originally designed for demographic inference in evolutionary biology. It has optional support for conducting coalescent simulation using the 'coala' package.

AuthorPaul Staab [aut, cre], Lisha Mathew [aut], Dirk Metzler [aut, ths]
Date of publication2016-05-13 22:54:03
MaintainerPaul Staab <develop@paulstaab.de>
LicenseGPL (>= 3)
Version3.2.0
https://github.com/statgenlmu/jaatha

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jaatha
jaatha/inst
jaatha/inst/CITATION
jaatha/inst/doc
jaatha/inst/doc/jaatha-intro.Rmd
jaatha/inst/doc/jaatha-intro.R
jaatha/inst/doc/jaatha-evolution.html
jaatha/inst/doc/jaatha-intro.html
jaatha/inst/doc/jaatha-evolution.R
jaatha/inst/doc/jaatha-evolution.Rmd
jaatha/tests
jaatha/tests/testthat.R
jaatha/tests/testthat
jaatha/tests/testthat/test-block.R
jaatha/tests/testthat/test-fit-glm.R
jaatha/tests/testthat/test-jaatha-log.R
jaatha/tests/testthat/test-initialization.R
jaatha/tests/testthat/test-likelihood.R
jaatha/tests/testthat/test-tools.R
jaatha/tests/testthat/test-sim-cache.R
jaatha/tests/testthat/test-stat-cubes.R
jaatha/tests/testthat/test-jaatha-data.R
jaatha/tests/testthat/test-jaatha-model.R
jaatha/tests/testthat/test-zzz-bootstrapping.R
jaatha/tests/testthat/test-coala-interface.R
jaatha/tests/testthat/test-jaatha-function.R
jaatha/tests/testthat/test-par-ranges.R
jaatha/NAMESPACE
jaatha/NEWS.md
jaatha/R
jaatha/R/jaatha_model.R jaatha/R/initialization.R jaatha/R/jaatha_data.R jaatha/R/boot_jaatha.R jaatha/R/jaatha.R jaatha/R/simulation_cache.R jaatha/R/stat_cube.R jaatha/R/block.R jaatha/R/coala_interface.R jaatha/R/fit_glm.R jaatha/R/jaatha_log.R jaatha/R/tools.R jaatha/R/par_ranges.R jaatha/R/likelihood.R jaatha/R/stat_basic.R
jaatha/vignettes
jaatha/vignettes/jaatha-intro.Rmd
jaatha/vignettes/jaatha-evolution.Rmd
jaatha/README.md
jaatha/MD5
jaatha/build
jaatha/build/vignette.rds
jaatha/DESCRIPTION
jaatha/man
jaatha/man/create_jaatha_model.Rd jaatha/man/create_jaatha_model.function.Rd jaatha/man/create_jaatha_stat.Rd jaatha/man/create_jaatha_data.Rd jaatha/man/jaatha.Rd jaatha/man/coarsen_jsfs.Rd jaatha/man/create_jaatha_model.coalmodel.Rd jaatha/man/get_start_pos.Rd jaatha/man/estimate_llh.Rd jaatha/man/boot_jaatha.Rd

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