jaccard.test.pairwise: Pair-wise tests for Jaccard/Tanimoto similarity coefficients

In jaccard: Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients

Description

Given a data matrix, it computes pair-wise Jaccard/Tanimoto similarity coefficients and p-values among rows (variables). For fine controls, use "jaccard.test".

Usage

jaccard.test.pairwise(dat, method = "mca", verbose = TRUE,
  compute.qvalue = TRUE, ...)

Arguments

dat	a data matrix
method	a method to compute a p-value ("mca", "bootstrap", "asymptotic", or "exact")
verbose	whether to print progress messages
compute.qvalue	whether to compute q-values
...	optional arguments for specific computational methods

Value

jaccard.test.pairwise returns a list of matrices

statistics	Jaccard/Tanimoto similarity coefficients
pvalues	p-values
qvalues	q-values

See Also

jaccard.test

jaccard documentation built on May 2, 2019, 12:51 p.m.