jacpop: Jaccard Index for Population Structure Identification

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Uses the Jaccard similarity index to account for population structure in sequencing studies. This method was specifically designed to detect population stratification based on rare variants, hence it will be especially useful in rare variant analysis.

Author
Dmitry Prokopenko
Date of publication
2016-07-26 02:11:59
Maintainer
Dmitry Prokopenko <dmitry.prokopenko@uni-bonn.de>
License
GPL-3
Version
0.5

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Man pages

generate_pw_jaccard
Calculate pairwise Jaccard similarity matrix

Files in this package

jacpop
jacpop/NAMESPACE
jacpop/R
jacpop/R/jaccard_simple.R
jacpop/MD5
jacpop/DESCRIPTION
jacpop/man
jacpop/man/generate_pw_jaccard.Rd