jagsUI: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses

A set of wrappers around 'rjags' functions to run Bayesian analyses in 'JAGS' (specifically, via 'libjags'). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the 'R2WinBUGS'/'R2OpenBUGS' packages to allow easy switching between MCMC samplers.

Author
Ken Kellner <ken@kenkellner.com>
Date of publication
2016-02-22 08:04:14
Maintainer
Ken Kellner <ken@kenkellner.com>
License
GPL-2
Version
1.4.2
URLs

View on CRAN

Man pages

autojags
Automatically run jagsUI analyses to convergence
jags
Call JAGS from R
jagsbasic
Simplified function to call JAGS from R
ppcheck
Posterior Predictive Checks for Bayesian Analyses fit in JAGS
traceplot
Traceplots of JAGS output
update
Update a JAGS model
whiskerplot
Whisker plots of parameter posterior distributions

Files in this package

jagsUI
jagsUI/NAMESPACE
jagsUI/NEWS
jagsUI/R
jagsUI/R/runparallel.R
jagsUI/R/translateparams.R
jagsUI/R/densityplot.R
jagsUI/R/plot.R
jagsUI/R/jags.R
jagsUI/R/autojags.R
jagsUI/R/xyplot.R
jagsUI/R/processinput.R
jagsUI/R/datacheck.R
jagsUI/R/update.R
jagsUI/R/processoutput.R
jagsUI/R/updatebasic.R
jagsUI/R/populate.R
jagsUI/R/setmodules.R
jagsUI/R/orderparams.R
jagsUI/R/summarymatrix.R
jagsUI/R/jagsbasic.R
jagsUI/R/print.R
jagsUI/R/whiskerplot.R
jagsUI/R/runmodel.R
jagsUI/R/getdim.R
jagsUI/R/geninits.R
jagsUI/R/traceplot.R
jagsUI/R/bindmcmc.R
jagsUI/R/summary.R
jagsUI/R/ppcheck.R
jagsUI/R/testrhat.R
jagsUI/MD5
jagsUI/DESCRIPTION
jagsUI/man
jagsUI/man/whiskerplot.Rd
jagsUI/man/traceplot.Rd
jagsUI/man/update.Rd
jagsUI/man/jagsbasic.Rd
jagsUI/man/autojags.Rd
jagsUI/man/jags.Rd
jagsUI/man/ppcheck.Rd