jagsUI: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Version 1.4.4

A set of wrappers around 'rjags' functions to run Bayesian analyses in 'JAGS' (specifically, via 'libjags'). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the 'R2WinBUGS'/'R2OpenBUGS' packages to allow easy switching between MCMC samplers.

AuthorKen Kellner <contact@kenkellner.com>
Date of publication2016-12-03 09:26:01
MaintainerKen Kellner <contact@kenkellner.com>
LicenseGPL-2
Version1.4.4
URL https://github.com/kenkellner/jagsUI
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("jagsUI")

Popular man pages

autojags: Automatically run jagsUI analyses to convergence
jags: Call JAGS from R
ppcheck: Posterior Predictive Checks for Bayesian Analyses fit in JAGS
traceplot: Traceplots of JAGS output
update: Update a JAGS model
View: View a jagsUI output object in a separate window
whiskerplot: Whisker plots of parameter posterior distributions
See all...

All man pages Function index File listing

Man pages

autojags: Automatically run jagsUI analyses to convergence
jags: Call JAGS from R
jagsbasic: Simplified function to call JAGS from R
ppcheck: Posterior Predictive Checks for Bayesian Analyses fit in JAGS
traceplot: Traceplots of JAGS output
update: Update a JAGS model
View: View a jagsUI output object in a separate window
whiskerplot: Whisker plots of parameter posterior distributions

Functions

View Man page Source code
View.default Source code
View.jagsUI Man page Source code
autojags Man page Source code
bind.mcmc Source code
data.check Source code
densityplot.jagsUI Source code
gen.inits Source code
get.dim Source code
jags Man page
jags.basic Man page Source code
jagsUI Man page
jagsUI-class Man page
jagsUIbasic-class Man page
order.params Source code
plot.jagsUI Source code
populate Source code
pp.check Man page Source code
print.jagsUI Source code
process.input Source code
process.output Source code
run.model Source code
run.parallel Source code
set.modules Source code
summary.jagsUI Source code
summary.matrix Source code
test.Rhat Source code
traceplot Man page Source code
traceplot.default Source code
traceplot.jagsUI Man page Source code
translate.params Source code
update Man page
update,jagsUI-method Man page
update.jagsUI Man page Source code
update.jagsUIbasic Source code
whiskerplot Man page Source code
xyplot.jagsUI Source code

Files

NAMESPACE
NEWS
R
R/runparallel.R
R/translateparams.R
R/densityplot.R
R/plot.R
R/jags.R
R/autojags.R
R/xyplot.R
R/processinput.R
R/View.R
R/datacheck.R
R/update.R
R/processoutput.R
R/updatebasic.R
R/populate.R
R/setmodules.R
R/orderparams.R
R/summarymatrix.R
R/jagsbasic.R
R/print.R
R/whiskerplot.R
R/runmodel.R
R/getdim.R
R/geninits.R
R/traceplot.R
R/bindmcmc.R
R/summary.R
R/ppcheck.R
R/testrhat.R
MD5
DESCRIPTION
man
man/whiskerplot.Rd
man/traceplot.Rd
man/update.Rd
man/View.Rd
man/jagsbasic.Rd
man/autojags.Rd
man/jags.Rd
man/ppcheck.Rd
jagsUI documentation built on May 19, 2017, 7:31 a.m.

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