jetset: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays

On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Install the latest version of this package by entering the following in R:
install.packages("jetset")
AuthorQiyuan Li, Aron Eklund
Date of publication2017-04-05 11:15:11 UTC
MaintainerAron Eklund <eklund@cbs.dtu.dk>
LicenseArtistic-2.0
Version3.4.0
http://www.cbs.dtu.dk/biotools/jetset/

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Files

inst
inst/CITATION
inst/doc
inst/doc/jetset.Rnw
inst/doc/jetset.pdf
inst/doc/jetset.R
NAMESPACE
NEWS
data
data/scores.u133x3p.RData
data/scores.hgu133a.RData
data/scores.hgu133plus2.RData
data/scores.hgu95av2.RData
R
R/jetset.R
vignettes
vignettes/jetset.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/scores.Rd man/jscores.Rd man/jmap.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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