jetset: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays

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On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Author
Qiyuan Li, Aron Eklund
Date of publication
2016-06-29 02:40:38
Maintainer
Aron Eklund <eklund@cbs.dtu.dk>
License
Artistic-2.0
Version
3.3.0
URLs

View on CRAN

Man pages

jmap
Retrieve jetset mapped probe sets
jscores
Retrieve jetset scores for probe sets
scores
Data: Probe set quality scores

Files in this package

jetset
jetset/inst
jetset/inst/CITATION
jetset/inst/doc
jetset/inst/doc/jetset.Rnw
jetset/inst/doc/jetset.pdf
jetset/inst/doc/jetset.R
jetset/NAMESPACE
jetset/NEWS
jetset/data
jetset/data/scores.u133x3p.RData
jetset/data/scores.hgu133a.RData
jetset/data/scores.hgu133plus2.RData
jetset/data/scores.hgu95av2.RData
jetset/R
jetset/R/jetset.R
jetset/vignettes
jetset/vignettes/jetset.Rnw
jetset/README.md
jetset/MD5
jetset/build
jetset/build/vignette.rds
jetset/DESCRIPTION
jetset/man
jetset/man/scores.Rd
jetset/man/jscores.Rd
jetset/man/jmap.Rd