tests/README.md

In jlmerclusterperm: Cluster-Based Permutation Analysis for Densely Sampled Time Data

Tests and Coverage

02 September, 2023 09:24:44

• Coverage
• Unit Tests

This output is created by covrpage.

Coverage

Coverage summary is created using the covr package.

| Object | Coverage (%) | |:----------------------------------------------------------------------|:------------:| | jlmerclusterperm | 92.30 | | R/utils.R | 78.57 | | R/permute_timewise_statistics.R | 81.01 | | R/compute_timewise_statistics.R | 88.64 | | R/aaa.R | 89.23 | | R/threshold_search.R | 89.47 | | R/jlmer_spec.R | 91.19 | | R/clusters_methods.R | 93.83 | | R/calculate_pvalue.R | 94.44 | | R/permute.R | 95.24 | | R/clusterpermute.R | 95.45 | | R/interop-utils-unexported.R | 96.00 | | R/tidy.R | 97.14 | | R/extract_clusters.R | 100.00 | | R/interop-utils.R | 100.00 | | R/jlmer.R | 100.00 | | R/julia_rng.R | 100.00 |

Unit Tests

Unit Test summary is created using the testthat package.

| file | n | time | error | failed | skipped | warning | |:------------------------------------------------------------------|----:|------:|------:|-------:|--------:|--------:| | test-aaa.R | 4 | 45.21 | 0 | 0 | 0 | 0 | | test-clusterpermute.R | 10 | 21.30 | 0 | 0 | 0 | 0 | | test-jlmer.R | 6 | 2.27 | 0 | 0 | 0 | 0 | | test-jlmer_spec.R | 5 | 0.09 | 0 | 0 | 0 | 0 | | test-julia_rng.R | 9 | 0.12 | 0 | 0 | 0 | 0 | | test-permute.R | 7 | 1.38 | 0 | 0 | 0 | 0 | | test-progress.R | 5 | 0.06 | 0 | 0 | 0 | 0 | | test-singularity.R | 3 | 3.72 | 0 | 0 | 0 | 0 | | test-threshold_search.R | 1 | 0.25 | 0 | 0 | 0 | 0 | | test-timewise_statistics.R | 9 | 0.08 | 0 | 0 | 0 | 0 |

Show Detailed Test Results

| file | context | test | status | n | time | |:----------------------------------------------------------------------|:--------------------|:----------------------------------------------------------|:-------|----:|------:| | test-aaa.R | aaa | Setup with seed works (use 2 for testing) | PASS | 2 | 45.18 | | test-aaa.R | aaa | RNG initializes to seed=1 counter=0 | PASS | 2 | 0.03 | | test-clusterpermute.R | clusterpermute | CPAs under the same RNG state are identical | PASS | 1 | 17.73 | | test-clusterpermute.R | clusterpermute | Piecemeal and wholesale CPAs are identical | PASS | 4 | 0.03 | | test-clusterpermute.R | clusterpermute | Errors on incompatible clusters | PASS | 3 | 2.19 | | test-clusterpermute.R | clusterpermute | Errors on no predictors | PASS | 2 | 1.35 | | test-jlmer.R | jlmer | direct and indirect fits identical | PASS | 2 | 1.11 | | test-jlmer.R | jlmer | returns julia object | PASS | 2 | 0.00 | | test-jlmer.R | jlmer | direct and indirect fits identical - mixed | PASS | 2 | 1.16 | | test-jlmer_spec.R | jlmer_spec | Minimal specification without grouping structures allowed | PASS | 2 | 0.03 | | test-jlmer_spec.R | jlmer_spec | Inform misspecifications in grouping structure | PASS | 2 | 0.03 | | test-jlmer_spec.R | jlmer_spec | Warn uneven time sampling rate | PASS | 1 | 0.03 | | test-julia_rng.R | julia_rng | RNG counter setter/getter | PASS | 2 | 0.06 | | test-julia_rng.R | julia_rng | RNG seed setter/getter | PASS | 2 | 0.01 | | test-julia_rng.R | julia_rng | RNG restore | PASS | 3 | 0.02 | | test-julia_rng.R | julia_rng | RNG generate random seed | PASS | 2 | 0.03 | | test-permute.R | permute | preserves participant structure | PASS | 1 | 0.89 | | test-permute.R | permute | preserves temporal structure | PASS | 1 | 0.05 | | test-permute.R | permute | guesses type | PASS | 1 | 0.10 | | test-permute.R | permute | increments counter | PASS | 1 | 0.02 | | test-permute.R | permute | shuffling reproducibility | PASS | 1 | 0.08 | | test-permute.R | permute | levels of a category shuffled together | PASS | 2 | 0.24 | | test-progress.R | progress | No side effects when called empty | PASS | 1 | 0.02 | | test-progress.R | progress | Side effect by show, width, or both | PASS | 3 | 0.03 | | test-progress.R | progress | Restore startup option | PASS | 1 | 0.01 | | test-singularity.R | singularity | Informs on singularity | PASS | 3 | 3.72 | | test-threshold_search.R | threshold_search | tests all steps | PASS | 1 | 0.25 | | test-timewise_statistics.R | timewise_statistics | chisq bound by 0-1 | PASS | 1 | 0.03 | | test-timewise_statistics.R | timewise_statistics | dims of empirical stats | PASS | 2 | 0.02 | | test-timewise_statistics.R | timewise_statistics | tidy dims of empirical stats | PASS | 2 | 0.00 | | test-timewise_statistics.R | timewise_statistics | dims of null stats | PASS | 2 | 0.01 | | test-timewise_statistics.R | timewise_statistics | tidy dims of null stats | PASS | 2 | 0.02 |

Session Info

| Field | Value | |:---------|:----------------------------------| | Version | R version 4.3.0 (2023-04-21 ucrt) | | Platform | x86_64-w64-mingw32/x64 (64-bit) | | Running | Windows 11 x64 (build 22621) | | Language | English_United States | | Timezone | America/New_York |

| Package | Version | |:---------|:--------| | testthat | 3.1.10 | | covr | 3.6.2 | | covrpage | 0.2 |

jlmerclusterperm documentation built on June 30, 2024, 5:07 p.m.